magnuspalmblad
Associate Professor and Head of Bioinformatics at the LUMC Center for Proteomics and Metabolomics
Leiden University Medical CenterLeiden, the Netherlands
Pinned Repositories
bioinformatics-software-metadata-enhancement
ChEBI2Plot
compareMS2
compareMS2 provides a pairwise global comparison between LC-MS/MS datasets based on similarity between the tandem mass spectra. Applications include molecular phylogenetics, quality control, pathogen identification and food authentication.
cytoscape-app-samples
Cytoscape 3 sample code for App developers.
EACH
Semantic Annotation of Methods Sections in Analytical Chemistry
elixir-metadata-project
EuropePMC2ChEBI
KNIME workflow for extracting ChEBI annotations from a Europe PMC literature search
mzXML2stl
Coverter between mzXML and STL format, e.g. for 3D printing LC-MS data
NGP
This is a collection of single-molecule, next-generation proteomics (NGP) simulation and analysis algorithms.
Refactored-FastPaSS
FastPaSS is an GPU accerelated spectral library search tool. This version is a rewrite of the original code published by Baumgardner.
magnuspalmblad's Repositories
magnuspalmblad/NGP
This is a collection of single-molecule, next-generation proteomics (NGP) simulation and analysis algorithms.
magnuspalmblad/compareMS2
compareMS2 provides a pairwise global comparison between LC-MS/MS datasets based on similarity between the tandem mass spectra. Applications include molecular phylogenetics, quality control, pathogen identification and food authentication.
magnuspalmblad/Refactored-FastPaSS
FastPaSS is an GPU accerelated spectral library search tool. This version is a rewrite of the original code published by Baumgardner.
magnuspalmblad/ChEBI2Plot
magnuspalmblad/EACH
Semantic Annotation of Methods Sections in Analytical Chemistry
magnuspalmblad/EuropePMC2ChEBI
KNIME workflow for extracting ChEBI annotations from a Europe PMC literature search
magnuspalmblad/mzXML2stl
Coverter between mzXML and STL format, e.g. for 3D printing LC-MS data
magnuspalmblad/bioinformatics-software-metadata-enhancement
magnuspalmblad/cytoscape-app-samples
Cytoscape 3 sample code for App developers.
magnuspalmblad/elixir-metadata-project
magnuspalmblad/IonMobility
Datasets for ion mobility prediction
magnuspalmblad/magnuspalmblad
magnuspalmblad/magnuspalmblad.github.io
:art: A ridiculously elegant Jekyll theme.
magnuspalmblad/magnuspalmblad_blog
magnuspalmblad/psi-ms-CV
HUPO-PSI mass spectrometry CV
magnuspalmblad/shic
shic is a collection of shims for use in automated workflow composition
magnuspalmblad/synthetic-health-data-generator
magnuspalmblad/WOMBAT-Pipelines
magnuspalmblad/addFeatures
addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features
magnuspalmblad/averageRegions
averageRegions averages the spectra in all or a defined subset of regions in a SCiLS Lab dataset and outputs this a Bruker-style .xy file.
magnuspalmblad/biohackathon-projects-2024
Project code for BioHackathon Europe 2024.
magnuspalmblad/compareMS2-test
Compare samples by MS2 spectra
magnuspalmblad/gitdemo
magnuspalmblad/GLYCO
Semantic Annotation of Methods Sections in Glycomics and Glycoproteomics Papers
magnuspalmblad/HDAnalyzeR
HDAnalyzeR: HDA Internal Package for Streamed-line Proteomics Analysis
magnuspalmblad/helloWorld
magnuspalmblad/mzXMLrenumber
Renumbers the N spectra in an mzXML file to consecutive numbers 1, 2, ..., N.
magnuspalmblad/navpa
Navpa is non-software, deriving its name from nav pa', Klingon for paper town.
magnuspalmblad/RSQKit
Research Software Quality Kit materials