Goal
This program aims to find top n K-mears in given fastQ file and prints to console
Usage
./dnaKmers --filename [filename] --kmersize [kmersize] --topcount [topcount] --threadSupport [0,1] OR ./dnaKmers [filename] [kmersize] [topcount]
Features
MultiThread support: if --threadSupport != 0 it runs multi threaded. Default runs single thread Polymorphism support: any classes extends CounterBase class can be used as different count approaches
Running Code
Code is written in CLion and tested by CMake 3.5.2 in order to compile from strach:
- get into build folder
- run cmake ..
- run make
Or
run compile.sh