Codes of all experiments to prepare results are in this repository, along with comments. This parent readme will also store directions and guidelines as well to recreate the experiments. Will also contain meeting notes.
experiments are run in this machine: 131.215.78.41 ajker jonno
Had to do the following:
export PYTHONPATH=/home/atif/krispmer/soft/krispmer-github-repo/kRISP-mER/kRISP-meR_source:$PYTHONPATH
export PATH=/home/atif/krispmer/soft/bowtie2-2.4.5-linux-x86_64:$PATH
export PATH=/home/atif/guidescan2/guidescan-cli-master/build/bin:$PATH
- Add on-tgt activity scores
- Fix package error
Hamming distance = 3, time = ~14 sec, mem = 11.7 GB Hamming distance = 2, time = ~7 sec, mem = 0.64 GB Hamming distance = 1, time = ~6 sec, mem = 0.14 GB