/phylogenetic-tree

Very short repo that will construct and show a phylogenetic tree from pairwise distance matrix.

Primary LanguageC

phylogenetic-tree

Very short repo that will construct and show a phylogenetic tree from pairwise distance matrix.

Steps are:

  1. first set PATH for quicktree
  2. export PATH=/Users/mbr5797/PSU/Research/neighbor-joining/quicktree-master:$PATH
  3. then run quicktree -m distance_matrix > out
  4. then activate environment that has Bio, matplotlib and pyplot (bioconda in your machine)
  5. then run this script