Pinned Repositories
advent_of_code_2023
My solutions to Advent of code 2023 challenges
breakpoint_refinement
Refinement of structural variants using Oxford Nanopore sequencing data
chess
Object-oriented Python chess program
delgbs
Detection of deletions and duplications from GBS data
gwask
Utilities to work with GWAS results from GAPIT and k-mers GWAS
HaplotypeMiner
Gene-centered haplotyping from SNP data
katcher
Extract aligned reads containing a set of k-mers
kmers_ld
Compute pairwise LD from presence/absence of k-mers
soybean_kmer_gwas
Code used for "k-mer-based GWAS enhances the discovery of causal variants and candidate genes in soybean"
soybean_sv_paper
Structural variation analysis in soybean using Oxford Nanopore and Illumina sequencing data
malemay's Repositories
malemay/HaplotypeMiner
Gene-centered haplotyping from SNP data
malemay/katcher
Extract aligned reads containing a set of k-mers
malemay/gwask
Utilities to work with GWAS results from GAPIT and k-mers GWAS
malemay/soybean_kmer_gwas
Code used for "k-mer-based GWAS enhances the discovery of causal variants and candidate genes in soybean"
malemay/soybean_sv_paper
Structural variation analysis in soybean using Oxford Nanopore and Illumina sequencing data
malemay/breakpoint_refinement
Refinement of structural variants using Oxford Nanopore sequencing data
malemay/kmers_ld
Compute pairwise LD from presence/absence of k-mers
malemay/advent_of_code_2023
My solutions to Advent of code 2023 challenges
malemay/chess
Object-oriented Python chess program
malemay/delgbs
Detection of deletions and duplications from GBS data
malemay/formation_grid
Formation sur le package grid de R
malemay/PhD_second_chapter
Config files for my GitHub profile.
malemay/sveval
Functions to compare a SV call sets against a truth set.
malemay/svmu
A program to call variants from genome alignment
malemay/svmutools
Processing the output of svmu and converting it to VCF format