Issues
- 1
More refactoring wanted!
#75 opened by lomereiter - 2
- 0
empty operand in filtering expression
#73 opened by mamarjan - 1
AttributeValue constructors
#65 opened by lomereiter - 1
Improve README and docs
#62 opened by mamarjan - 5
refactor Record.append_to
#66 opened by lomereiter - 1
Include the tools in Galaxy
#69 opened by mamarjan - 2
Make rake build the tools by default
#70 opened by pjotrp - 1
Numerical comparison for filtering
#53 opened by mamarjan - 1
Length of transcripts for filtering
#54 opened by mamarjan - 1
- 1
MAN pages for utilities
#43 opened by mamarjan - 2
gff3-ffetch segfaults
#71 opened by pjotrp - 0
- 0
- 2
JSON output
#55 opened by mamarjan - 1
GFF3 to JSON tool
#51 opened by mamarjan - 2
Output only selected fields in a table format
#63 opened by mamarjan - 0
- 0
Output in CSV instead of tab delimited columns
#67 opened by mamarjan - 1
GFF3 to GTF and vice versa
#64 opened by mamarjan - 2
GTF support
#52 opened by mamarjan - 2
Improve validation speed
#59 opened by mamarjan - 0
A tool for sorting GFF3 files
#61 opened by mamarjan - 0
Filtering features
#57 opened by mamarjan - 1
Records to represent pragmas and comments
#50 opened by mamarjan - 1
GDC support
#44 opened by mamarjan - 1
Ruby interface for validation of GFF3 files
#39 opened by mamarjan - 1
A new repository for the Ruby gem
#49 opened by mamarjan - 0
Add toString and recursiveToString for Feature
#48 opened by mamarjan - 2
A gem for rubygems.org
#42 opened by mamarjan - 1
gff3-ffetch to pass FASTA data to output
#46 opened by mamarjan - 1
count-features utility too slow
#33 opened by mamarjan - 0
A tool for sorting GFF3 files
#47 opened by mamarjan - 0
Windows binaries
#45 opened by mamarjan - 4
Packaging for Ubuntu 32 and 64 bit
#36 opened by mamarjan - 1
- 1
- 0
Ruby interface for filtering GFF3 files
#38 opened by mamarjan - 2
& and , have special meaning in attributes field
#37 opened by mamarjan - 0
- 2
Basic GFF3 output in D
#34 opened by mamarjan - 1
Move fasta stuff in gff3.d
#24 opened by pjotrp - 11
replace_url_escaped_chars() too slow
#30 opened by mamarjan - 12
Benchmark tool seg-fault
#31 opened by mamarjan - 0
Too many files starting with gff3
#32 opened by mamarjan - 0
A utility for benchmarking the parser
#29 opened by mamarjan - 1
Refactor RecordRange
#25 opened by pjotrp - 0
Validation of record formatting should be lazy
#26 opened by pjotrp - 1
Move validation out into its own module
#27 opened by pjotrp