manastech/cafa5

Issues

• Missing File 'train_terms.tsv'

  #39 opened 9 months ago by aniket414
  0

• Create a simple NN Conv1D taking sequences and binary classifying one term

  #32 opened a year ago by leandroradusky
  0

• Compare CNN vs RNN classificators for sample terms

  #37 opened a year ago by leandroradusky
  0

• Create a simple RNN taking sequences and binary classifying one term

  #36 opened a year ago by leandroradusky
  0

• Analysis: get a list of candidate GO terms

  #28 opened a year ago by leandroradusky
  1

• Function to assess precision/recall for predicted results

  #9 opened a year ago by leandroradusky
  0

• max_distance argument for get_parents()

  #34 opened a year ago by nthiad
  1

• [EPIC] Neural Networks

  #31 opened a year ago by leandroradusky
  0

• Package Structure

  #1 opened a year ago by leandroradusky
  0

• Load PDB structures for a protein object

  #17 opened a year ago by leandroradusky
  0

• Load AlphaFold structure for a protein object

  #18 opened a year ago by leandroradusky
  2

• Function to get candidate GO terms to be predicted

  #26 opened a year ago by leandroradusky
  2

• Function to retrieve contact maps from structures

  #16 opened a year ago by leandroradusky
  0

• Function to get one-hot-encoded protein sequence

  #21 opened a year ago by leandroradusky
  0

• Create Structure class able to handle PDBs

  #15 opened a year ago by leandroradusky
  0

• Function to download protein known GO terms from uniprot

  #8 opened a year ago by leandroradusky
  0

• Create a setup.py file for pip

  #4 opened a year ago by leandroradusky
  0

• [EPIC] Handle protein sequences

  #20 opened a year ago by leandroradusky
  0

• [EPIC] Handle protein structures

  #14 opened a year ago by leandroradusky
  0

• Ramp up & learning

  #12 opened a year ago by diegoliberman
  0

• [optional] Publish the package on conda repository

  #6 opened a year ago by leandroradusky
  1

• Publish the package on pip repository

  #5 opened a year ago by leandroradusky
  0

• Create a dummy predict function

  #3 opened a year ago by leandroradusky
  0

• [EPIC] Benchmarking & Data Viz

  #7 opened a year ago by leandroradusky
  0

• [EPIC] Published package with skeleton functionality

  #2 opened a year ago by leandroradusky
  0