Lamp-DP-MT
Setup instructions for running LMS
- Locally publish lms
$ git clone https://github.com/TiarkRompf/virtualization-lms-core.git
$ cd virtualization-lms-core
$ git checkout develop
- patch
project/Build.scala
:val scalaTest = "org.scalatest" % "scalatest_2.10.0" % "2.0.M5" % "test"
val virtScala = Option(System.getenv("SCALA_VIRTUALIZED_VERSION")).getOrElse("2.10.0")
- patch
project/build.properties
:sbt.version=0.12.1
$ sbt publish-local
- Run the optional tutorial
$ git clone https://github.com/julienrf/lms-tutorial.git
$ cd lms-tutorial && sbt run tutorial.Usage
Setup instructions for running the project
- Checkout
$ git clone https://github.com/manojo/lamp-dp-mt.git
$ cd lamp-dp-mt
- Run Scala parsers (with SBT)
- Run simple tests:
$ sbt 'clean' 'librna' 'run-main v4.examples.Tests'
(only 1 instance of SBT) - Run any program:
$ sbt run
- Run Zuker folding:
$ sbt zuker
- Run RNAFold:
$ sbt rnafold
- Other problems: mm1,mm2,mm3,align,zuker,rnafold can be run from within SBT
- Run simple tests:
- Legacy: run CUDA parsers (without SBT)
- Run CUDA tests:
$ ./build
- Cleanup:
$ ./build clean
- Get the program list:
$ ./build help
those ending with Gen are CUDA-enabled - Run a program with:
$ ./build <class>
- Run CUDA tests: