Error: Build on Ubuntu
uestcwcw opened this issue · 3 comments
Hi, there is a error on python3 build, the ubuntu is 20.04
Configuring for python 3.10...
-- A library with LAPACK API found.
-- Found AMD library: /usr/lib/x86_64-linux-gnu/libamd.so
-- Found AMD header in: /usr/include/suitesparse
-- Found CAMD library: /usr/lib/x86_64-linux-gnu/libcamd.so
-- Found CAMD header in: /usr/include/suitesparse
-- Found COLAMD library: /usr/lib/x86_64-linux-gnu/libcolamd.so
-- Found COLAMD header in: /usr/include/suitesparse
-- Found CCOLAMD library: /usr/lib/x86_64-linux-gnu/libccolamd.so
-- Found CCOLAMD header in: /usr/include/suitesparse
-- Found CHOLMOD library: /usr/lib/x86_64-linux-gnu/libcholmod.so
-- Found CHOLMOD header in: /usr/include/suitesparse
-- Found CXSPARSE library: /usr/lib/x86_64-linux-gnu/libcxsparse.so
-- Found SuiteSparseQR library: /usr/lib/x86_64-linux-gnu/libspqr.so
-- Found SuiteSparseQR header in: /usr/include/suitesparse
-- Found Intel Thread Building Blocks (TBB) library: /usr/lib/x86_64-linux-gnu/libtbb.so, assuming SuiteSparseQR was compiled with TBB.
-- Found Intel Thread Building Blocks (TBB) Malloc library: /usr/lib/x86_64-linux-gnu/libtbbmalloc.so
-- Found SuiteSparse_config library: /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so
-- Found SuiteSparse_config header in: /usr/include/suitesparse
-- Adding librt: /usr/lib/x86_64-linux-gnu/librt.so to SuiteSparse_config libraries (required on Linux & Unix [not OSX] if SuiteSparse is compiled with timing).
-- Did not find METIS library (optional SuiteSparse dependency)
-- Found installed version of Eigen: /usr/lib/cmake/eigen3
-- Found required Ceres dependency: Eigen version 3.3.7 in /usr/include/eigen3
-- Found required Ceres dependency: glog
-- Found installed version of gflags: /usr/lib/x86_64-linux-gnu/cmake/gflags
-- Detected gflags version: 2.2.2
-- Found required Ceres dependency: gflags
-- Found Ceres version: 1.14.0 installed in: /usr with components: [EigenSparse, SparseLinearAlgebraLibrary, LAPACK, SuiteSparse, CXSparse, SchurSpecializations, OpenMP, Multithreading]
-- Found installed version of gflags: /usr/lib/x86_64-linux-gnu/cmake/gflags
-- Detected gflags version: 2.2.2
-- Found OpenCV: /usr (found version "4.2.0")
-- Found OpenCV: /usr (found version "4.2.0") found components: core imgproc calib3d imgcodecs
-- pybind11 v2.11.0 dev1
-- Configuring done
-- Generating done
-- Build files have been written to: /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/cmake_build
Compiling extension...
[ 3%] Built target gtest
[ 7%] Built target foundation
[ 11%] Built target akaze
[ 13%] Built target test_main
[ 42%] Built target vl
[ 44%] Built target dense
[ 45%] Built target geo
[ 46%] Built target bundle
[ 52%] Built target geometry
[ 53%] Linking CXX executable foundation_test
[ 54%] Linking CXX executable dense_test
[ 56%] Linking CXX executable geo_test
[ 59%] Built target features
[ 59%] Linking CXX shared module /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pygeo.cpython-37m-x86_64-linux-gnu.so
[ 60%] Linking CXX shared module /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pydense.cpython-37m-x86_64-linux-gnu.so
[ 61%] Linking CXX executable geometry_test
[ 62%] Linking CXX executable bundle_test
[ 63%] Linking CXX shared module /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pybundle.cpython-37m-x86_64-linux-gnu.so
[ 71%] Built target map
[ 74%] Built target robust
[ 74%] Linking CXX shared module /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pyfeatures.cpython-37m-x86_64-linux-gnu.so
[ 75%] Linking CXX shared module /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pygeometry.cpython-37m-x86_64-linux-gnu.so
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [foundation/CMakeFiles/foundation_test.dir/build.make:152：foundation/foundation_test] 错误 1
make[1]: *** [CMakeFiles/Makefile2:469：foundation/CMakeFiles/foundation_test.dir/all] 错误 2
make[1]: *** 正在等待未完成的任务....
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [dense/CMakeFiles/dense_test.dir/build.make:138：dense/dense_test] 错误 1
make[1]: *** [CMakeFiles/Makefile2:641：dense/CMakeFiles/dense_test.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [geo/CMakeFiles/geo_test.dir/build.make:138：geo/geo_test] 错误 1
make[1]: *** [CMakeFiles/Makefile2:785：geo/CMakeFiles/geo_test.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [geo/CMakeFiles/pygeo.dir/build.make:136：/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pygeo.cpython-37m-x86_64-linux-gnu.so] 错误 1
make[1]: *** [CMakeFiles/Makefile2:755：geo/CMakeFiles/pygeo.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [dense/CMakeFiles/pydense.dir/build.make:136：/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pydense.cpython-37m-x86_64-linux-gnu.so] 错误 1
make[1]: *** [CMakeFiles/Makefile2:611：dense/CMakeFiles/pydense.dir/all] 错误 2
[ 76%] Building CXX object map/CMakeFiles/pymap.dir/python/pybind.cc.o
[ 76%] Linking CXX shared module /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pyrobust.cpython-37m-x86_64-linux-gnu.so
[ 77%] Linking CXX executable map_test
[ 80%] Built target sfm
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [bundle/CMakeFiles/bundle_test.dir/build.make:181：bundle/bundle_test] 错误 1
make[1]: *** [CMakeFiles/Makefile2:556：bundle/CMakeFiles/bundle_test.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [geometry/CMakeFiles/geometry_test.dir/build.make:184：geometry/geometry_test] 错误 1
make[1]: *** [CMakeFiles/Makefile2:870：geometry/CMakeFiles/geometry_test.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [geometry/CMakeFiles/pygeometry.dir/build.make:137：/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pygeometry.cpython-37m-x86_64-linux-gnu.so] 错误 1
make[1]: *** [CMakeFiles/Makefile2:840：geometry/CMakeFiles/pygeometry.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [bundle/CMakeFiles/pybundle.dir/build.make:164：/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pybundle.cpython-37m-x86_64-linux-gnu.so] 错误 1
make[1]: *** [CMakeFiles/Makefile2:525：bundle/CMakeFiles/pybundle.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [features/CMakeFiles/pyfeatures.dir/build.make:138：/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pyfeatures.cpython-37m-x86_64-linux-gnu.so] 错误 1
make[1]: *** [CMakeFiles/Makefile2:698：features/CMakeFiles/pyfeatures.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [map/CMakeFiles/map_test.dir/build.make:172：map/map_test] 错误 1
make[1]: *** [CMakeFiles/Makefile2:1083：map/CMakeFiles/map_test.dir/all] 错误 2
/usr/bin/ld: 找不到 -lpybind11
/usr/bin/ld: 找不到 -lpybind11
collect2: error: ld returned 1 exit status
make[2]: *** [robust/CMakeFiles/pyrobust.dir/build.make:139：/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/pyrobust.cpython-37m-x86_64-linux-gnu.so] 错误 1
make[1]: *** [CMakeFiles/Makefile2:926：robust/CMakeFiles/pyrobust.dir/all] 错误 2
In file included from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/python/pybind.cc:4:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/geometry/pose.h: In constructor ‘geometry::Pose::Pose(const Vec3d&, const Vec3d&)’:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/geometry/pose.h:20:11: warning: variable ‘T_cw’ set but not used [-Wunused-but-set-variable]
20 | Mat4d T_cw = Mat4d::Identity();
| ^~~~
In file included from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/dataviews.h:6,
from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/python/pybind.cc:5:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/shot.h: At global scope:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/shot.h:74:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers]
74 | const geometry::Pose* const GetPose() const;
| ^~~~~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/shot.h:75:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers]
75 | geometry::Pose* const GetPose();
| ^~~~~~~~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/shot.h:137:3: warning: type qualifiers ignored on function return type [-Wignored-qualifiers]
137 | const geometry::Camera* const GetCamera() const { return shot_camera_; }
| ^~~~~
In file included from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/python/pybind.cc:10:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h: In function ‘pybind11::iterator pybind11::make_ptr_iterator(Iterator, Sentinel, Extra&& ...)’:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:156:67: error: wrong number of template arguments (4, should be at least 5)
156 | typedef detail::iterator_state<Iterator, Sentinel, false, Policy> state;
| ^
In file included from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/third_party/pybind11/include/pybind11/functional.h:12,
from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:3,
from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/python/pybind.cc:10:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/third_party/pybind11/include/pybind11/pybind11.h:2278:8: note: provided for ‘template<class Access, pybind11::return_value_policy Policy, class Iterator, class Sentinel, class ValueType, class ... Extra> struct pybind11::detail::iterator_state’
2278 | struct iterator_state {
| ^~~~~~~~~~~~~~
In file included from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/python/pybind.cc:10:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h: In lambda function:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:163:23: error: request for member ‘first_or_done’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
163 | if (!s.first_or_done)
| ^~~~~~~~~~~~~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:164:22: error: request for member ‘it’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
164 | ++s.it;
| ^~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:166:20: error: request for member ‘first_or_done’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
166 | s.first_or_done = false;
| ^~~~~~~~~~~~~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:167:22: error: request for member ‘it’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
167 | if (s.it == s.end) {
| ^~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:167:30: error: request for member ‘end’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
167 | if (s.it == s.end) {
| ^~~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:168:20: error: request for member ‘first_or_done’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
168 | s.first_or_done = true;
| ^~~~~~~~~~~~~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:171:25: error: request for member ‘it’ in ‘s’, which is of non-class type ‘state’ {aka ‘int’}
171 | return s.it;
| ^~
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h: At global scope:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:183:10: error: redefinition of ‘template<pybind11::return_value_policy Policy, class Type, class ... Extra> pybind11::iterator pybind11::make_value_iterator(Type&, Extra&& ...)’
183 | iterator make_value_iterator(Type &value, Extra &&... extra) {
| ^~~~~~~~~~~~~~~~~~~
In file included from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/third_party/pybind11/include/pybind11/functional.h:12,
from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/pybind_utils.h:3,
from /media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/map/python/pybind.cc:10:
/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/opensfm/src/third_party/pybind11/include/pybind11/pybind11.h:2445:10: note: ‘template<pybind11::return_value_policy Policy, class Type, class ... Extra> pybind11::iterator pybind11::make_value_iterator(Type&, Extra&& ...)’ previously declared here
2445 | iterator make_value_iterator(Type &value, Extra &&...extra) {
| ^~~~~~~~~~~~~~~~~~~
make[2]: *** [map/CMakeFiles/pymap.dir/build.make:63：map/CMakeFiles/pymap.dir/python/pybind.cc.o] 错误 1
make[1]: *** [CMakeFiles/Makefile2:1114：map/CMakeFiles/pymap.dir/all] 错误 2
make: *** [Makefile:95：all] 错误 2
Traceback (most recent call last):
File "/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/setup.py", line 60, in
build_c_extension()
File "/media/kb459/844C32D34C32C02A/WangChenwei/OpenSfM-main/setup.py", line 54, in build_c_extension
subprocess.check_call(
File "/home/kb459/anaconda3/lib/python3.10/subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', '-j64']' returned non-zero exit status 2.
I got the same error except that I'm using Python 3.8 and the last line prints "-j8" instead of "-j64".
I would be very happy if someone has a solution that I can try.
I can see your problem, This problem is more of a system-based problem when there is not enough space at /usr/tmp/.
Try closing all your running CPP programs in the background/foreground (if there are any) and then try to compile it again.
Hard Suggestion: Try cloning and building the package all again in a new directory. I can see most of your dependencies are already installed.
It's more of a common error, let me know if you were able to solve this error. I am able to run this without any problem on my setup - Ubuntu 22.04 itself. Happy to help.