Pinned Repositories
boolnet-perturb
Robustness and Plasticity in Regulatory Networks. The BoolNetPerturb package adds functions to BoolNet for perturbing Boolean Regulatory Networks. This functions can be used for the study of biological systems. This package is capable of labeling states, simulating multiple knock-outs and over-expressions and simulating fixed and transient perturbations in the states and trajectory of a network. See the Jupyter Tutorials for more examples.
boolnet-perturb-0.1
Robustness and Plasticity in Regulatory Networks. The BoolNetPerturb package adds functions to BoolNet for perturbing Boolean Regulatory Networks. This functions can be used for the study of biological systems. This package is capable of labeling states, simulating multiple knock-outs and over-expressions and simulating fixed and transient perturbations in the states and trajectory of a network. See the Jupyter Tutorials for more examples.
CursoPandas2020
Curso de pandas usando datos abiertos de carpetas de investigación de la CdMx
CursoPandas2023
Introducción al análisis de datos con python
CursoTexto
Tutoria de limpieza y análisis de datos usando tres estrategias: comparación de strings, estandarizar con catálogo(fuzzywuzzy) y stemming (NLTK + snowball).
netlogo
Netlogo code examples
rgriffin
The rGriffin package is an R connector to Griffin. Gene Regulatory Interaction Formulator For Inquiring Networks (griffin) is a java library for inference and analysis of Boolean Network models. Griffin takes as inputs biologically meaningful constraints and turns them into a symbolic representation. Using a SAT engine, griffin explores the Boolean Network search space, finding all satisfying assignments that are compatible with the specified constraints. The rgriffin package includes a number of functions to interact with the BoolNet package. See the Jupyter Tutorials for more examples.
TutorialJupyter_CopoNieveKoch
Tutorial para el curso de Jupyter Notebooks y Markdown impartido para Platzi. El ejemplo es fractal Copo de Nieve de Koch
WibblyWobbly
Python library to create equivalence dictionaries between a set of texts and a catalog using FuzzyWuzzy.
mar-esther23's Repositories
mar-esther23/CursoPandas2020
Curso de pandas usando datos abiertos de carpetas de investigación de la CdMx
mar-esther23/boolnet-perturb-0.1
Robustness and Plasticity in Regulatory Networks. The BoolNetPerturb package adds functions to BoolNet for perturbing Boolean Regulatory Networks. This functions can be used for the study of biological systems. This package is capable of labeling states, simulating multiple knock-outs and over-expressions and simulating fixed and transient perturbations in the states and trajectory of a network. See the Jupyter Tutorials for more examples.
mar-esther23/CursoPandas2023
Introducción al análisis de datos con python
mar-esther23/rgriffin
The rGriffin package is an R connector to Griffin. Gene Regulatory Interaction Formulator For Inquiring Networks (griffin) is a java library for inference and analysis of Boolean Network models. Griffin takes as inputs biologically meaningful constraints and turns them into a symbolic representation. Using a SAT engine, griffin explores the Boolean Network search space, finding all satisfying assignments that are compatible with the specified constraints. The rgriffin package includes a number of functions to interact with the BoolNet package. See the Jupyter Tutorials for more examples.
mar-esther23/boolnet-perturb
Robustness and Plasticity in Regulatory Networks. The BoolNetPerturb package adds functions to BoolNet for perturbing Boolean Regulatory Networks. This functions can be used for the study of biological systems. This package is capable of labeling states, simulating multiple knock-outs and over-expressions and simulating fixed and transient perturbations in the states and trajectory of a network. See the Jupyter Tutorials for more examples.
mar-esther23/CursoTexto
Tutoria de limpieza y análisis de datos usando tres estrategias: comparación de strings, estandarizar con catálogo(fuzzywuzzy) y stemming (NLTK + snowball).
mar-esther23/netlogo
Netlogo code examples
mar-esther23/Publiton2019
Análisis de red de contratos gubernamentales realizado para el Publiton 2019 CDMX
mar-esther23/TutorialJupyter_CopoNieveKoch
Tutorial para el curso de Jupyter Notebooks y Markdown impartido para Platzi. El ejemplo es fractal Copo de Nieve de Koch
mar-esther23/WibblyWobbly
Python library to create equivalence dictionaries between a set of texts and a catalog using FuzzyWuzzy.
mar-esther23/BeePlantite
Methods from the article Floral visitors in urban gardens and natural areas: diversity and interaction networks in a neotropical urban landscape
mar-esther23/BooleanCOVID
Boolean models of covid19 inmunopatogenesis
mar-esther23/CircuitsAnalyses
mar-esther23/DatatonesYCursos
Jupyter notebooks, scripts y otros documentos generados durante datatones y cursos
mar-esther23/EOBM_2024_viz
mar-esther23/LIBB_Mathematics
This repository contains Python code developed for the course "Mathematics" for the LIBB. The code is based on examples from the book Introduction to Systems Biology: Workbook for Flipped-classroom Teaching by Sauter, T., & Albrecht, M. (2023, p. 170).
mar-esther23/random-python
Random python scripts
mar-esther23/regnet
Python library for analyzing dynamic boolean networks.
mar-esther23/RNPDNO_analisis
RNPDNO_analisis