mash dist
Opened this issue · 2 comments
I am new to linux. When I run mash dist, I meet a trouble as the follow
mash dist refseq.genomes.k21.s1000.msh 19-40.random.fq.gz.msh > 19-40.distances.tab
ERROR: could not open "refseq.genomes.k21.s1000.msh" for reading.
Can you give me some suggestions?
The database has been successfully saved.
wget https://gembox.cbcb.umd.edu/mash/refseq.genomes.k21s1000.msh
--2020-11-21 18:00:35-- https://gembox.cbcb.umd.edu/mash/refseq.genomes.k21s1000.msh
Connecting to 10.53.6.245:3128... connected.
Proxy request sent, awaiting response... 301 Moved Permanently
Location: https://obj.umiacs.umd.edu/marbl_publications/mash/refseq.genomes.k21s1000.msh [following]
--2020-11-21 18:00:37-- https://obj.umiacs.umd.edu/marbl_publications/mash/refseq.genomes.k21s1000.msh
Connecting to 10.53.6.245:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 754115096 (719M) [model/mesh]
Saving to: ‘refseq.genomes.k21s1000.msh’
refseq.genomes.k21s1000.msh 100%[=====================================================>] 719.18M 6.84MB/s in 10m 1s
2020-11-21 18:10:40 (1.20 MB/s) - ‘refseq.genomes.k21.s1000.msh’ saved [754115096/754115096]
the only time I have faced this issue is when I didn't give the right path to the sketch database. You could give complete path to the location where the sketch is downloaded (use pwd to get the path)