marbl/Mash

Issues

• Error in mash sketch

  #150 opened 4 years ago by ddjamalova
  2

• Add brief description about what MASH does to the README.md

  #182 opened 7 months ago by diekhans
  0

• output the containment sequence

  #162 opened 3 years ago by yywyaoyaowu
  3

• Argument list too long

  #179 opened 10 months ago by Lil-5
  2

• Can Mash accurately classify subspecies?

  #172 opened 2 years ago by rpalcab
  1

• Distance between two genomes not consistent when I chnage the rest of the dataset.

  #180 opened 10 months ago by Louis-MG
  2

• Update RefSeq?

  #161 opened 3 years ago by asaldivar93
  2

• Explanation of the .msh format

  #175 opened 2 years ago by MBHallgren
  2

• ERROR: Did not find fasta records

  #140 opened 4 years ago by HAugustijn
  4

• The release version of refseq.genomes.k21.s1000.msh

  #177 opened 2 years ago by guosongjia
  0

• Doubts when using mash on multiple assemblies

  #173 opened 2 years ago by alanxelena
  1

• MASH distance for AA

  #174 opened 2 years ago by jianshu93
  0

• -M for weighted kmer

  #171 opened 2 years ago by jianshu93
  0

• Cannot update Mash from version 1.1 to version 2

  #170 opened 2 years ago by juliadouglasf
  0

• m1 ARM support?

  #169 opened 3 years ago by jianshu93
  0

• Mash dist -p, wrong number of threads (bug?)

  #168 opened 3 years ago by d-golzato
  0

• Phylogenetic Tree

  #157 opened 3 years ago by JChristopherEllis
  3

• Sorting on mash-distance

  #163 opened 3 years ago by gk7279
  1

• Missing include limits

  #167 opened 3 years ago by tillea
  0

• Are Mash distances always symmetric?

  #166 opened 3 years ago by donovan-h-parks
  0

• Inconsistent number of matching hashes

  #165 opened 3 years ago by durrantmm
  1

• Sketching paired- and single-end reads together

  #164 opened 3 years ago by VGalata
  0

• how many genomes can the mash deal with?

  #160 opened 3 years ago by Caiyulu-818
  0

• Mash screen winner-take-all and multiple best number of hash hits

  #159 opened 3 years ago by a-damC
  1

• mash sketch outputs reference.msh with only one row

  #158 opened 3 years ago by Valentin-Bio-zz
  1

• Question - saving ref sketches and different versions of MASH

  #156 opened 3 years ago by CarmenSheppard
  2

• Mash screen's output format makes parsing slow at scale

  #146 opened 4 years ago by bede
  3

• Duplication genomes in triangle matrix

  #149 opened 4 years ago by liu930724
  1

• Checking if two mash sketches are identical..

  #155 opened 3 years ago by sheikki
  0

• Compilation on Ubuntu 20.04 LTS

  #154 opened 4 years ago by sheikki
  0

• Which release or date of refseq.genomes.k21.s1000.msh

  #139 opened 4 years ago by ssun6
  3

• mash dist

  #151 opened 4 years ago by yirui0214
  2

• Compilation with x86_64-w64-mingw32-g++

  #153 opened 4 years ago by rlpires
  0

• filtering based on p-value

  #152 opened 4 years ago by smb20200615
  0

• How to build my own database?

  #148 opened 4 years ago by zckoo007
  0

• More than 3 .fasta files

  #147 opened 4 years ago by Laura-Elena-Hernandez
  1

• mash triangle matrix

  #145 opened 4 years ago by susheelbhanu
  2

• Conda Install: Still Version 1.1

  #144 opened 4 years ago by womandrea
  2

• Need abundance information

  #137 opened 5 years ago by satishv
  1

• ERROR reading file?

  #143 opened 4 years ago by thh32
  2

• Providing sketches as "mixture" input for mash screen?

  #142 opened 4 years ago by ms-gx
  0

• Subset a bigger sketch for bootstrapping

  #141 opened 4 years ago by CBorreda
  0

• Input read stream

  #135 opened 5 years ago by esteinig
  1

• Handling collisions

  #136 opened 5 years ago by kloetzl
  0

• Saving sketch for screen

  #133 opened 5 years ago by larssnip
  0

• Import MinHash.capnp make error

  #132 opened 5 years ago by kodingkoning
  0

• add support for multi-fasta files give (as mixture) in screen

  #131 opened 5 years ago by ndaniel
  0

• mash screen => ERROR: reading inputs

  #130 opened 5 years ago by ndaniel
  1

• Minimum distance to report

  #129 opened 5 years ago by ndaniel
  0

• genome size with -g and parsing multiple files

  #128 opened 5 years ago by iaposto
  0