thh32
Postdoc at RWTH Aachen, Uniklinik Areas of interest; Metagenomics, Bioinformatics, Genome assembly, Microbial ecology
RWTH Aachen
Pinned Repositories
consort
Consort: amplicon sequence variant based analysis of 16S rRNA datasets from minimal consortia
consortm
ConsortM: MALDI-based consortia monitoring
dna2proteins
This is an adaptation of https://github.com/prestevez/dna2proteins which outputs all protein sequences instead of the best one. I take no credit for writing the code or responsibility if it doesnt work.
Lipase_reclassification
A proposed update for the classification and description of bacterial lipolytic enzymes
LSA_comparison
Files and scripts required to re-run the analysis described in the paper 'The BLAST and the spurious: Biases in genomic data propagate from heurstic local sequence alignment algorithms'.
MiMiC2
A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.
Protologger
Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
protologue-wiki
A repository of prokaryote descriptions, along with associated metadata, linked to GTDB.
Spherical
Spherical is an iterative approach to large metagenome assemblies, designed for clusters where insufficient RAM is available for a straightforward assembly.
VTLC
Viral Taxonomic Lineage Classification (VTLC) dataset
thh32's Repositories
thh32/Protologger
Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
thh32/Spherical
Spherical is an iterative approach to large metagenome assemblies, designed for clusters where insufficient RAM is available for a straightforward assembly.
thh32/dna2proteins
This is an adaptation of https://github.com/prestevez/dna2proteins which outputs all protein sequences instead of the best one. I take no credit for writing the code or responsibility if it doesnt work.
thh32/Lipase_reclassification
A proposed update for the classification and description of bacterial lipolytic enzymes
thh32/LSA_comparison
Files and scripts required to re-run the analysis described in the paper 'The BLAST and the spurious: Biases in genomic data propagate from heurstic local sequence alignment algorithms'.
thh32/Assembly-stats
Provides some of the common assembly statistics used to identify how good a metagenomic assembly is.
thh32/consort
Consort: amplicon sequence variant based analysis of 16S rRNA datasets from minimal consortia
thh32/consortm
ConsortM: MALDI-based consortia monitoring
thh32/MiMiC2
A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.
thh32/protologue-wiki
A repository of prokaryote descriptions, along with associated metadata, linked to GTDB.
thh32/Bio-py
Some useful python scripts for biologists
thh32/Convert-Text-to-Hyperlinks
This script searches for hyperlink text in the layout, and converts it to QuarkXPress hyperlinks
thh32/csv-to-html-table
thh32/Curver
thh32/Extractinator
Uses GFF files to identify regions of interest within a sequence file and produce a separate file of only these extracted regions.
thh32/gan
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
thh32/GMMs
A manually curated database of human gut metabolic modules.
thh32/GutLipases
Annotation of the microbial lipases within the mammalian gut
thh32/iMGMC
Repository of the integrated mouse gut metagenomic catalog
thh32/InvestiGut
thh32/IVON
Integrative Viral Ontology Network
thh32/Leftover_blast
If BLAST fails this can identify the last completed match and provide the unfinished fasta file for completion.
thh32/MIMIC
A repository to generate minimal microbial consorita
thh32/MiMiC-1
Minimal Microbial Consortia creation tools
thh32/RECON
REconstruction Of Novel culturable species
thh32/Renamer
Gives each sequence in a FASTA file a unique name
thh32/Rumen_mycoviruses
Analysis of the rumen mycoviral population
thh32/Shannon_diversity_index
Calculates Shannon diversity index value for a dictionary of values
thh32/Split_fasta
Splits fasta file
thh32/Thermophile_TCAH-ND-CC
Datafiles and analysis scripts utilised in the study of genomic adaptations within thermophiles