Pinned Repositories
BioLockJ
BioLockJ is an automated metagenomics pipeline for WGS/16s sequence analysis. The extensible Java framework writes/executes bash scripts to call external applications via BioModule interface. BioModules perform sequence processing, taxonomy assignment, univariate modelling, and report generation.
blj_ext_modules
Additional modules that run as part of BioLockJ but are not part of the base program
blj_support
Fodor Lab support files + BioLockJ Test pipelines + Docker helper scripts
China_geography
Inference_picrust
mag_nf_aws
MAG_support_scripts
scripts for support MAG analysis
MAG_urbanization
MicroscopicColitisMicrobiome
plotmicrobiome
ssun6's Repositories
ssun6/Inference_picrust
ssun6/BioLockJ
BioLockJ is an automated metagenomics pipeline for WGS/16s sequence analysis. The extensible Java framework writes/executes bash scripts to call external applications via BioModule interface. BioModules perform sequence processing, taxonomy assignment, univariate modelling, and report generation.
ssun6/plotmicrobiome
ssun6/blj_ext_modules
Additional modules that run as part of BioLockJ but are not part of the base program
ssun6/blj_support
Fodor Lab support files + BioLockJ Test pipelines + Docker helper scripts
ssun6/China_geography
ssun6/mag_nf_aws
ssun6/MAG_support_scripts
scripts for support MAG analysis
ssun6/MAG_urbanization
ssun6/MicroscopicColitisMicrobiome
ssun6/PINmicrobiome
Race, the vaginal microbiome, and spontaneous preterm birth in a study of preterm birth risk using a subset of the Pregnancy, Infection, and Nutrition (PIN) Study
ssun6/sheepdog_testing_suite
Test suite for BioLockJ development team.
ssun6/StoolSwabTissue