libgsl.so.25: cannot open shared object file

Question

libgsl.so.25: cannot open shared object file

wook2014 opened this issue 3 years ago · 3 comments

wook2014 commented 3 years ago

I have installed mashmap through conda, with version mashmap-2.0-pl5321h8e5b204_8, but it shows error " libgsl.so.25: cannot open shared object file". I checked on anaconda that the requirement of this version mashmap, it said 2.8>gsl>=2.7, and the file in /env/mashmap/bin is libgsl.so.27.

Answer 1 · 2022-03-27T10:50:18.000Z

Sorry I am not conda expert, maybe there are two versions of gsl on your system. The incorrect version is probably being loaded at runtime. Please check if adjusting LD_LIBRARY_PATH environment variable works. https://stackoverflow.com/a/24971971

Answer 2 · 2022-05-05T13:27:39.000Z

To fix this error, one should add : GSL package to the conda recipe. see : https://anaconda.org/conda-forge/gsl

Answer 3 · 2023-07-10T18:28:52.000Z

@tdayris GSL has been added to the bioconda recipe. Thanks for letting us know and please reopen if this doesn't fix the issue 🙂