Pinned Repositories
7z
Because 7-zip source code was in a 7z archive [mirror]
AAF
alignment and assembly free
abrowse
The Advanced Genome Browser
alphafold
Open source code for AlphaFold.
genomeassembly
Implementation of ToL genome assembly workflows
hisat2
Graph-based alignment (Hierarchical Graph FM index)
MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
RoseTTAFold2
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
wook2014's Repositories
wook2014/abutils
Models, functions and visualization tools for working with adaptive immune receptore repertoire (AIRR) data.
wook2014/AGAT
Another Gtf/Gff Analysis Toolkit
wook2014/hisat2
Graph-based alignment (Hierarchical Graph FM index)
wook2014/alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
wook2014/Augustus
Genome annotation with AUGUSTUS
wook2014/BASALT
BASALT employs multiple binners with multiple thresholds to produce initial bins, then utilizes neural networks to identify core sequences to remove redundant bins and refine non-redundant bins
wook2014/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
wook2014/biobox
https://link.springer.com/book/10.1007/978-3-031-20414-2
wook2014/biopipe
Taxonomy classification pipeline (bacteria, virus, fungi)
wook2014/bowtie2
A fast and sensitive gapped read aligner
wook2014/EPSAPG
EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
wook2014/FABind
FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
wook2014/genbank_submission_tool
wook2014/genie2
Protein structure diffusion model for unconditional protein generation and motif scaffolding
wook2014/gffutils2
GFF and GTF file manipulation and interconversion
wook2014/MashMap
A fast approximate aligner for long DNA sequences
wook2014/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
wook2014/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
wook2014/pavian
🌈 Interactive analysis of metagenomics data
wook2014/pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
wook2014/phylonium
Fast and Accurate Estimation of Evolutionary Distances
wook2014/PowerToys
Windows system utilities to maximize productivity
wook2014/Predmoter
Deep Learning application to predict NGS data
wook2014/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
wook2014/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
wook2014/SqueezeMeta
A complete pipeline for metagenomic analysis
wook2014/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
wook2014/vamb
Variational autoencoder for metagenomic binning
wook2014/virion
The Global Virome in One Network
wook2014/wgdi
Finely identify the whole genome duplication events and generate the genomic homology tables.