Pinned Repositories
7z
Because 7-zip source code was in a 7z archive [mirror]
AAF
alignment and assembly free
abutils
Models, functions and visualization tools for working with adaptive immune receptore repertoire (AIRR) data.
alphafold
Open source code for AlphaFold.
genomeassembly
Implementation of ToL genome assembly workflows
hisat2
Graph-based alignment (Hierarchical Graph FM index)
MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
RoseTTAFold2
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
wook2014's Repositories
wook2014/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
wook2014/biocode
Bioinformatics code libraries and scripts
wook2014/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
wook2014/bowtie2
A fast and sensitive gapped read aligner
wook2014/bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
wook2014/Chimera
Chimera: A Versatile Metagenomic Classification Tool
wook2014/CodonTransformer
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
wook2014/directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
wook2014/DNABarcodeCompatibility
R-package to find optimised sets of compatible barcodes for multiplex experiments
wook2014/FastOMA
FastOMA is a scalable software package to infer orthology relationship.
wook2014/geneviewer
An R package designed for drawing gene arrow maps
wook2014/gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
wook2014/MANIAC
Computation of average nucleotide identity with the use of MMseqs2
wook2014/micov
Aggregate genome coverage
wook2014/miniwdl
Workflow Description Language developer tools & local runner
wook2014/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
wook2014/omamer
OMAmer - tree-driven and alignment-free protein assignment to sub-families
wook2014/PhIP-Seq
A protocol for VirScan, an application of the PhIP-Seq method for profiling the specificities of human antiviral antibodies.
wook2014/picrust2
Code, unit tests, and tutorials for running PICRUSt2
wook2014/primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
wook2014/pyseqrna
pySeqRNA: a python-based package for RNASeq data analysis
wook2014/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
wook2014/rosetta
The Rosetta Bio-macromolecule modeling package.
wook2014/scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
wook2014/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
wook2014/STAR
RNA-seq aligner
wook2014/v2rayNG
wook2014/viratax
Taxonomy classification of viral sequences / contigs
wook2014/vsearch
Versatile open-source tool for microbiome analysis
wook2014/wdl
Workflow Description Language - Specification and Implementations