white gaps and serial numbered scaffolds in SALSA outputs
Closed this issue · 0 comments
Smediterranea commented
In the above Juicebox plot, there are many white lines. These white lines correspond to scaffolds with serial numbers produced by SALSA. For example, scaffold_1 in the original assembly is now reported in the .assembly file as scaffold_1_1 and scaffold_1_2. Can you tell me why SALSA did this and how I shall treat these scaffolds?
Thank you!
L