long-read
There are 24 repositories under long-read topic.
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
chanzuckerberg/shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
marbl/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
kcleal/dysgu
Toolkit for calling structural variants using short or long reads
mortazavilab/swan_vis
A Python library to visualize and analyze long-read transcriptomes
PASSIONLab/BELLA
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
JensUweUlrich/Taxor
Fast and space-efficient taxonomic classification of long reads
vpc-ccg/lordfast
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
jteutenberg/downpore
Suite of tools for use in genome assembly and consensus. Work in progress.
Clinical-Genomics/stranger
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
fairliereese/LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
PacificBiosciences/minorseq
Minor Variant Calling and Phasing Tools
comprna/R2Dtool
Analyse RNA feature distributions.
guigolab/tmerge
Merge transcriptome read-to-genome alignments into non-redundant transcript models
simpsonlab/preqclr
preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
smail-lab-cmh/ga4k-sv-finder
Long read structural variants in rare disease cohort
TF-Chan-Lab/LAFITE
tool for long read transcriptome assembly
cihanerkut/shanti
Shallow Nanopore Sequencing for Transcriptomics
shinichinamba/MuSTA
MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing
shinichinamba/simlady
SIMulator for Long read transcriptome Analysis with RNA DecaY model
WEHIGenomicsRnD/nanopore-transfer-automation
Performs archiving and transfer of Nanopore sequencing data
jib-collective/doc-mongolia
A web-documentary about uranium mining in Mongolia and it's consequences for the nomads, living there.
liviuspenter/ONT-lineage-tracing
Analyses of Penter, Borji & Nagler et al., Nature Communications 2024
shaniAmare/long_read_benchmark_project_scripts
A safe place for the personal scripts used in the long-read benchmarking project.