mortazavilab/swan_vis

Issues

• sg.add_adata(adata_file) not working

  #29 opened 7 months ago by wdg118
  5

• Speeding up Exon skipping and intron retention on HPC

  #30 opened 7 months ago by rugilemat
  0

• Adding transcriptome in a TALON-independent way?

  #26 opened 10 months ago by lscdanson
  3

• Index contains duplicate entries, cannot reshape

  #27 opened 8 months ago by rugilemat
  4

• MemoryError: Unable to allocate 113. GiB for an array with shape (9992, 3033596) and data type float32

  #23 opened a year ago by catsargent
  5

• Switch diffexp to pydeseq2 for differential gene and transcript expression testing

  #24 opened 2 years ago by fairliereese
  1

• plot a transcript with all transcripts as background

  #17 opened a year ago by xiaonalu
  8

• Issues differential expression

  #19 opened a year ago by rsalz
  3

• Example code problem

  #22 opened 2 years ago by liuxiawei
  1

• find_es_genes returns duplicated entries

  #21 opened 2 years ago by fairliereese
  0

• Differential isoform usage multiple conditions

  #20 opened 3 years ago by rsalz
  1

• Intron retention and exon skipping analysis

  #11 opened 3 years ago by rsalz
  22

• relation between splicing in/out sites and exons

  #18 opened 3 years ago by xiaonalu
  5

• replace talon.db

  #16 opened 3 years ago by xiaonalu
  10

• AttributeError: 'SwanGraph' object has no attribute 'ass_transcriptome'

  #15 opened 3 years ago by xiaonalu
  2

• Missing transcripts

  #14 opened 3 years ago by rsalz
  3

• Missing case for plottedgraph init

  #8 opened 3 years ago by fairliereese
  2

• swanvis broken?

  #10 opened 3 years ago by rsalz
  3

• Novelty info not found

  #9 opened 3 years ago by SziKayLeung
  3

• ES IR error

  #6 opened 4 years ago by ashokpatowary
  10

• ValueError

  #5 opened 4 years ago by ashokpatowary
  10

• self.create_dfs_db(fname, annot, whitelist, 'hepg2_1')

  #4 opened 4 years ago by ashokpatowary
  2

• cannot load swan into python using recommended installation method

  #3 opened 4 years ago by smorabit
  0