Pinned Repositories
cerberus
lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
parse_pipeline
PyWGCNA
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
swan_paper
Repository for commands used for the Swan manuscript
swan_vis
A Python library to visualize and analyze long-read transcriptomes
TALON
Technology agnostic long read analysis pipeline for transcriptomes
TALON-paper-2020
References and analyses for updated TALON paper
Topyfic
Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data
TranscriptClean
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
mortazavilab's Repositories
mortazavilab/PyWGCNA
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
mortazavilab/TALON
Technology agnostic long read analysis pipeline for transcriptomes
mortazavilab/TranscriptClean
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
mortazavilab/swan_vis
A Python library to visualize and analyze long-read transcriptomes
mortazavilab/lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
mortazavilab/cerberus
mortazavilab/Topyfic
Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data
mortazavilab/swan_paper
Repository for commands used for the Swan manuscript
mortazavilab/parse_pipeline
mortazavilab/TALON-paper-2020
References and analyses for updated TALON paper
mortazavilab/long-TUC-seq
long-TUC-seq pipeline
mortazavilab/cosmos-cluster6
UCI COSMOS Cluster 6: Genes, Genomes, and Skeletal Muscle Dystrophies
mortazavilab/ENCODE-references
A repository containing files and scripts requested by the ENCODE DCC for data submission
mortazavilab/TUC-seq
TUC-seq pipeline
mortazavilab/5xFAD_WGCNA
Systematic Phenotyping and Characterization of the 5xFAD mouse model of Alzheimer’s Disease
mortazavilab/lrgasp-talon
mortazavilab/mortazavilab.github.io
mortazavilab/polyAsite_workflow_GM12878