Pinned Repositories
200812_mats
Analysis related to PacBio datasets.
2021_c2c12
Code used to generate the figures for our 2021 manuscript on LR-Split-seq.
210413_pgp1
Analysis of PGP1 and PGP1-derived neurons and astrocytes
lab_pipelines
Pipelines for analyzing data for different protocols in the Mortazavi lab
LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
modelad_pipeline
paper_rnawg
Data processing scripts and figure recreation for the ENCODE4 RNA paper
rnawg
cerberus
swan_vis
A Python library to visualize and analyze long-read transcriptomes
fairliereese's Repositories
fairliereese/LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
fairliereese/paper_rnawg
Data processing scripts and figure recreation for the ENCODE4 RNA paper
fairliereese/lab_pipelines
Pipelines for analyzing data for different protocols in the Mortazavi lab
fairliereese/2021_c2c12
Code used to generate the figures for our 2021 manuscript on LR-Split-seq.
fairliereese/modelad_pipeline
fairliereese/rnawg
fairliereese/200812_mats
Analysis related to PacBio datasets.
fairliereese/210413_pgp1
Analysis of PGP1 and PGP1-derived neurons and astrocytes
fairliereese/210830_ucd_workshop
Code for analysis done for the 2021 UCD IsoSeq workshop
fairliereese/220124_swan_genpals
fairliereese/220310_hl60
fairliereese/220421_talon_debug
fairliereese/220512_ismb_workshop
fairliereese/220919_readthedocs_test
fairliereese/230412_lr_ss_exon_capture
fairliereese/230526_gencode
fairliereese/blog
fairliereese/encode_promoters
fairliereese/fairliereese.github.io
fairliereese/GSEApy
Gene Set Enrichment Analysis in Python
fairliereese/hopper
Diverse sampling for single-cell datasets
fairliereese/lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
fairliereese/pyranges
Performant Pythonic GenomicRanges
fairliereese/python-ternary
:small_red_triangle: Ternary plotting library for python with matplotlib
fairliereese/scisorseqr
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
fairliereese/seaborn
Statistical data visualization in Python
fairliereese/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
fairliereese/tama
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
fairliereese/tss-annotation
fairliereese/UCI_COSMOS