fairliereese/230526_gencode

conda activate modelad_snakemake_2
snakemake \
  -s Snakefile \
  -j 100 \
  --latency-wait 120 \
  --use-conda \
  --cluster "sbatch -A seyedam_lab --partition=highmem --mem={resources.mem_gb}GB -c {resources.threads} --mail-user=freese@uci.edu --mail-type=START,END,FAIL --time=72:00:00" -n

snakemake \
  -s Snakefile \
  -j 100 \
  --latency-wait 120 \
  --use-conda \
  --cluster "sbatch -A seyedam_lab --partition=highmem --mem={resources.mem_gb}GB -c {resources.threads} --mail-user=freese@uci.edu --mail-type=START,END,FAIL --time=72:00:00" -n

# locally
conda activate snakemake_vis
snakemake -s Snakefile --dag | dot -Tpng > ruledag.png

conda activate base_clone
snakemake \
  -s Snakefile \
  -j 100 \
  --latency-wait 120 \
  -n

Links:

• Human metadata

• Mouse metadata

• For the metadata files, I manually added column names