Pinned Repositories
200812_mats
Analysis related to PacBio datasets.
2021_c2c12
Code used to generate the figures for our 2021 manuscript on LR-Split-seq.
210413_pgp1
Analysis of PGP1 and PGP1-derived neurons and astrocytes
lab_pipelines
Pipelines for analyzing data for different protocols in the Mortazavi lab
LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
modelad_pipeline
paper_rnawg
Data processing scripts and figure recreation for the ENCODE4 RNA paper
rnawg
cerberus
swan_vis
A Python library to visualize and analyze long-read transcriptomes
fairliereese's Repositories
fairliereese/abacus-engine
A lightweight OpenGL engine that lets you get up and running faster
fairliereese/ddc
Dance Dance Convolution dataset tools and models
fairliereese/extract_explosions
Extensible and less complicated version of extract explosions
fairliereese/lrgasp-submissions
Definition and validators for LRGASP submissions
fairliereese/NanoSim
Nanopore sequence read simulator
fairliereese/protein_prediction
fairliereese/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
fairliereese/talon-lrgasp
Scripts to convert TALON output to the formats required for LRGASP
fairliereese/TALON_track_tools
Post-TALON tools to visualize transcript isoforms in the genome browser
fairliereese/triton