fairliereese's Stars
jonathanwilton/PUExtraTrees
uPU, nnPU and PN learning with Extra Trees classifier.
TransDecoder/TransDecoder
TransDecoder source
dzhang32/ggtranscript
Visualizing transcript structure and annotation using ggplot2
JMiguelRamirez/rDNA_variant_caller
Repository to call rDNA variants from short read sequencing
yukiteruono/pbsim3
PBSIM3: a simulator for all types of PacBio and ONT long reads
maickrau/ribotin
dgarrimar/manta
Non-parametric, asymptotic P-value computation for multivariate linear models
huangnengCSU/longcallR
LongcallR is a small variant caller for single molecule long-read RNA-seq data
has2k1/plotnine
A Grammar of Graphics for Python
smorabit/hdWGCNA
High dimensional weighted gene co-expression network analysis
asntech/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
Hoeze/snakemk_util
utility functions for snakemake
LappalainenLab/lorals
MuhammedHasan/gencode_utr_fix
Gencode UTR fix
landerlabcode/BigSur
pola-rs/polars
Dataframes powered by a multithreaded, vectorized query engine, written in Rust
snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
daler/trackhub
create, manage, and upload track hubs for use in the UCSC genome browser
MatthiasLienhard/isotools
IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
hilgers-lab/LATER
Long-reads-based Alternative Termination Estimation and Recognition (LATER)
owkin/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
DingWB/PyComplexHeatmap
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
erebboah/enc4_mouse_paper
Code for the ENCODE4 single-nucleus mouse analysis.
federicobocci/spliceJAC
pachterlab/splitcode
Flexible and efficient parsing, interpreting and editing of sequencing reads
mwaskom/seaborn
Statistical data visualization in Python
cmbi/SUsPECT
Variant effect prediction based on custom long-read transcriptomes
mortazavilab/Topyfic
Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data
ans4013/ScisorWiz
ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
LappalainenLab/lorals_paper_code