marbl/T2T-Browser

Genome browser hub for the T2T genomes and resources

T2T-Browser

UCSC Genome browser hub for the T2T genomes and resources

Link to the browser

• Stable Release version (Recommended)

  • Hub Connect: https://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&hubUrl=https://research.nhgri.nih.gov/CustomTracks/T2T_hubs/T2Tgenomes/hub.txt
  • Hub gateway: http://genome.ucsc.edu/cgi-bin/hgGateway?genome=T2T-CHM13v2.0&hubUtl=https://research.nhgri.nih.gov/CustomTracks/T2Tgenomes/T2T_test/hub.txt
  • Hub: https://research.nhgri.nih.gov/CustomTracks/T2T_hubs/T2Tgenomes/hub.txt

• Developmental version

  • Hub Connect: https://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&hubUrl=https://research.nhgri.nih.gov/CustomTracks/T2T_hubs/T2T_test/hub.txt
  • Hub gateway: http://genome.ucsc.edu/cgi-bin/hgTracks?genome=T2T-CHM13v2.0&hubUrl=https://research.nhgri.nih.gov/CustomTracks/T2T_hubs/T2T_test/hub.txt
  • Hub: https://research.nhgri.nih.gov/CustomTracks/T2T_hubs/T2T_test/hub.txt

What's in the browser

Latest tracks made publicly available for the following genomes:

• T2T-CHM13v2.0
• mGorGor1_v2.0
• mPanPan1_v2.0
• mPanTro3_v2.0
• mPonAbe1_v2.0
• mPonPyg2_v2.0
• mSymSyn1_v2.0
• HG002v1.0.1.MAT
• HG002v1.0.1.PAT

For convenience, the non-human primate genome browsers are available for its primary assembly versions as well in addition to the diploid version.