marbl/harvest-tools

NameError

Opened this issue · 5 comments

When trying to run parsnp I get the following Error

Traceback (most recent call last):
File "", line 624, in
NameError: name 'nameok' is not defined

What might be the reason for that?
thx

I am having the same error message. Where you able to solve this problem?

You have to delecte all other files like excel from your folders where you have stored your sequence files/where you want to run your calculation...

I just had the same problem and found a possible solution (for me at least, the issue appears fixed): You have to make sure that the directories you pass to parsnp via the -g and/or (not sure which one was the problem) -d options really only contain the kind of files parsnp expects. So remove any Excel files or whatever you may hav put there!

Hat tip to @mprojahn who sits next door :)

@mprojahn @mattflor I have done so..But the error still persists.

Look for hidden files, too!