marbl/harvest-tools

Issues

• Protobuf error, possibly related to C++ version

  #27 opened 4 months ago by verdurin
  0

• Please port to Python3

  #17 opened a year ago by tillea
  0

• how to use masking repeat file (.bed) in the reference genome

  #25 opened 3 years ago by sekhwal
  4

• command failed >>/tmp/_MEIVWgmag/harvest --midpoint-reroot -u -q -i

  #24 opened 3 years ago by smurray92
  1

• alignment file broken?

  #20 opened 4 years ago by Lneffe
  6

• xmfa to maf

  #22 opened 2 years ago by TANG-Furong
  0

• do y'all have an example using --signature?

  #21 opened 2 years ago by Phylloxera
  0

• Abort trap: 6 when converting file-type

  #16 opened 6 years ago by JSHuisman
  1

• I have the following error warning after trying to run parsnp

  #6 opened 5 years ago by sebastianguenther
  3

• Please enable parallel builds

  #15 opened 6 years ago by tillea
  0

• NameError

  #12 opened 8 years ago by mprojahn
  5

• ERROR: ref genome sequence seems to aligned! remove and restart

  #13 opened 8 years ago by snayfach
  0

• Variant annotation

  #1 opened 8 years ago by ondovb
  1

• Add ability to extract clade defining SNPs

  #10 opened 8 years ago by treangen
  1

• GI number currently used to verify properly paired GenBank annotations and fasta file

  #11 opened 8 years ago by treangen
  0

• default actions/warnings for no output

  #4 opened 10 years ago by ondovb
  0

• configure: WARNING: unrecognized options: --with-capnp

  #7 opened 10 years ago by tseemann
  3

• no putputs

  #9 opened 8 years ago by 4learning
  0

• parsnp only recruits a subset of genome fasta files in the directory

  #8 opened 9 years ago by TashyK
  1

• Protocol buffer size limit

  #3 opened 10 years ago by ondovb
  1

• Rerooting with non-binary root

  #5 opened 10 years ago by ondovb
  0

• API documentation

  #2 opened 10 years ago by ondovb
  0