use meryl

[duhuipeng]

Dear author

meryl if there are parameters, can retrieve the reads where the kmer is located

[arangrhie]

Hello,

I am not sure if I understood your question. Are you looking for a parameter that retrieves where a specific kmer is located in a read?

If this is the case, use meryl-lookup -dump. -sequence can be a read, fasta or fastq. -mers needs a meryl db, built with meryl count.