marbl/meryl

Issues

• How to get haplotype-specific reads?

  #52 opened 3 months ago by DayTimeMouse
  4

• conda install may have broken (possibly with a recent update?)

  #51 opened 4 months ago by JohnUrban
  1

• How to get kmer count in query fastq files with kmer database

  #50 opened 5 months ago by leon945945
  2

• Run Meryl on multiple fastq files

  #49 opened 5 months ago by NicMAlexandre
  2

• the parental specific kmers were intersected in progeny genome

  #40 opened 6 months ago by leon945945
  2

• feature request: filter reads with kmers from bam file?

  #39 opened a year ago by kevfengler227
  5

• Is this output correct?

  #48 opened 7 months ago by syresbr
  2

• API docs

  #46 opened 7 months ago by Adamtaranto
  1

• Use sequence to query meryl db

  #47 opened 7 months ago by Adamtaranto
  1

• How to install meryl2？

  #45 opened 7 months ago by socialhang
  1

• meryl count assertion failed with large K

  #44 opened 8 months ago by Dmitry-Antipov
  1

• Conda version issues

  #43 opened 8 months ago by nhartwic
  0

• version question about meryl

  #42 opened 9 months ago by bucongfan
  1

• How do you plot?

  #41 opened 9 months ago by Axze-rgb
  3

• Compile error

  #38 opened a year ago by Han-Cao
  2

• bitArray-v1.H:86 problem when running the pipeline

  #37 opened a year ago by mike-bioinfo
  1

• [Compile] ‘gettimeofday’ was not declared in this scope

  #36 opened a year ago by shawarden
  1

• meryl terminates with 'std::bad_alloc' and failed assertion

  #35 opened 2 years ago by wangjie07070910
  3

• How to cite meryl?

  #33 opened 2 years ago by rsharris
  4

• compile problem

  #32 opened 2 years ago by Solenyalyl
  2

• Homopolymer compression is not applied if the first read file is empty

  #31 opened 2 years ago by maickrau
  1

• database file parameters used in count output are too large

  #30 opened 2 years ago by brianwalenz
  0

• 'output' at end of command fails

  #29 opened 2 years ago by brianwalenz
  0

• segmentation fault for k<6

  #26 opened 3 years ago by JonEilers
  3

• ERROR: operation 'opNothing' cannot use sequence files as inputs.

  #23 opened 3 years ago by Gon1976
  6

• meryl-lookup -include

  #25 opened 3 years ago by duhuipeng
  1

• Using meryl to prepare for Merqury

  #24 opened 3 years ago by aureliendejode
  2

• eval/qv.sh meryl command not working

  #22 opened 4 years ago by mas160
  1

• Logging of reads kept and total reads wrong in lookup -exclude

  #21 opened 4 years ago by ASLeonard
  0

• Distinct parameter not documented

  #20 opened 4 years ago by gallardoalba
  0

• How to use meryl

  #17 opened 4 years ago by Kalpi-ds
  7

• hap_blot.sh

  #19 opened 4 years ago by duhuipeng
  1

• use meryl

  #18 opened 4 years ago by duhuipeng
  1

• fatal: clone of 'git@github.com:marbl/meryl-utility' into submodule path 'canu/src/utility' failed

  #15 opened 4 years ago by linsalrob
  2

• Seg fault in union-sum

  #16 opened 4 years ago by tbrown91
  3

• Support for printing top x % of most frequent k-mers

  #14 opened 5 years ago by cjain7
  0

• add support for homopolymer compressing the input sequence

  #13 opened 5 years ago by brianwalenz
  0

• add conversion to 'usual' acgt ordering to get canonical mer correct

  #12 opened 5 years ago by brianwalenz
  0

• allow a histogram to be generated from streamed data

  #11 opened 5 years ago by brianwalenz
  0

• add math operations on values

  #10 opened 5 years ago by brianwalenz
  0

• Feature request

  #9 opened 5 years ago by gf777
  0

• Add-on feature request: keep meryl database in memory

  #8 opened 5 years ago by SHuang-Broad
  0

• Segfault with k >= 38

  #7 opened 5 years ago by mrvollger
  4

• Q: Use this repo or Canu 1.8 for read-partitioning?

  #6 opened 5 years ago by SHuang-Broad
  5

• simple-dump or analogous tool

  #5 opened 5 years ago by erikenbody
  3

• k-mer size support >32?

  #3 opened 6 years ago by EvdH0
  0

• protein sequence support ,and nucl->prot translation support when 3*n kmer size

  #2 opened 6 years ago by wangyugui
  1

• kmer-mask support?

  #1 opened 6 years ago by wangyugui
  1