Pinned Repositories
marcmtk's Repositories
marcmtk/MadsR
an R package for handling data from the danish microbiological system MADS
marcmtk/mfold
mfold
marcmtk/abxaware
R package: Aggregate and plot antibiotic usage data by access, watch, and reserve (AWaRe) groups.
marcmtk/buttonfork
Monitor /r/thebutton.
marcmtk/configs
Config files used to define parameters specific to compute environments at different Institutions
marcmtk/covid_testing
marcmtk/cprr
Functions for working with Danish CPR numbers
marcmtk/datasciencecoursera
marcmtk/DataScienceSpecialization.github.io
http://DataScienceSpecialization.github.io
marcmtk/datasharing
The Leek group guide to data sharing
marcmtk/datatoolbox
For the Data scientist toolbox course on coursera.org
marcmtk/dehumanizer
just a docker file wrapping https://github.com/SamStudio8/dehumanizer
marcmtk/instruks
marcmtk/kraken2
The second version of the Kraken taxonomic sequence classification system
marcmtk/marcr
Misc. functions
marcmtk/mikrobiologi
SOPs
marcmtk/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
marcmtk/MultiQC
Main repo at
marcmtk/patogener
Identification, AMR gene detection and plasmid annotation of pathogens. Just a practice project for now
marcmtk/Perfect-bacterial-genome-tutorial
marcmtk/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
marcmtk/roam-css-styles
Visually polished CSS styles for RoamResearch
marcmtk/seq_report_docker
Dockerfile for Sequence report generation
marcmtk/skimr
A frictionless, pipeable approach to dealing with summary statistics
marcmtk/Spoon-Knife
This repo is for demonstration purposes only.
marcmtk/Test
marcmtk/unraid-templates
Templates for unRAID Docker Engine
marcmtk/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples