marcomeola
Metagenomic Bioinformatician, Microbial ecologist, Microbiome expertise.
University of ZurichZurich
Pinned Repositories
16s_dairydb
addinslist
Discover and install useful RStudio addins
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
awesome-r
A curated list of awesome R frameworks, libraries and software.
DAIRYdb
DECIPHER
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DECIPHER.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DECIPHER.
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
marcomeola's Repositories
marcomeola/DAIRYdb
marcomeola/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
marcomeola/16s_dairydb
marcomeola/awesome-r
A curated list of awesome R frameworks, libraries and software.
marcomeola/biobackery_workflows2
add usearch to biobackery/workflows
marcomeola/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
marcomeola/Cheese_16S
This is a docker image for 16S microbiome analyses in cheeses and dairy products
marcomeola/covgap
Genome mapping, consensus generating, variant calling and annotation tool for SARS-COV-2
marcomeola/crossvalid_tax
marcomeola/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
marcomeola/docker-SeekDeep
A dockerfile for building a docker with all needed libraries for SeekDeep
marcomeola/ezRun
An R meta-package for the analysis of Next Generation Sequencing data
marcomeola/FitGrowth
Shiny app for modelling bacterial growth kinetics
marcomeola/GMMs
A manually curated database of human gut metabolic modules.
marcomeola/google-location-heatmap
upload your google location history data and visualize it as a heatmap
marcomeola/markdown_supported_languages
Markdown supported languages for syntax highlighting
marcomeola/meolab_test
Allan Lab website
marcomeola/nanopore
marcomeola/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
marcomeola/oneliners
Useful bash one-liners for bioinformatics.
marcomeola/perchlorate-metagenome-2018
Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.
marcomeola/Perfect-bacterial-genome-tutorial
marcomeola/personal_page
My personal website using distill package in R markdown
marcomeola/singularity-r
R in a Singularity container
marcomeola/spirit
SPIRIT: a LIMS for study/biosample management
marcomeola/Split_on_Primer
Split a FASTQ or FASTA file into sub files based on the primers used.
marcomeola/starter-hugo-academic
marcomeola/StrainFinder
StrainFinder
marcomeola/test
Docker image
marcomeola/travis-ci
an example builder to build a container with Travis CI, and push to a Singularity Registry Server (or other endpoint)