This is a course taught as part of the curriculum of the Master program MARSYS-MARine EcoSYStem and Fishery Sciences at the Institute of Marine Ecosystem and Fishery Science (IMF), University of Hamburg, Germany.
All code (.Rmd) is available in this github repository. Feel free to browse, download, and even contribute by forking.
Source files for the gh-pages doc folder are organized as follows:
site
folder for the global webpages.exercises
folder for the case studies and exercise demo codes of specific lectures.
To create the html files for the docs folder, use the Build -> Build
All button in RStudio. This button will use the rules defined in
Makefiles
to produce the HTML files. make
will use the
rmarkdown::render_site()
function to create the files in the docs
folder.
The lecture presentations were coded using the
slidify framework. To render the .Rmd files (not
included in this repo) into HTML another function was used
(slidify::slidify()
) and all output files and any supporting files (in
asset, library, data, image and _plotting_files folders) moved
manually into the docs
folder for gh-pages.