marekborowiec

AMAS

Calculate summary statistics and manipulate multiple sequence alignments

good_genes

lab-wiki

metazoan_phylogenomics

Code from Borowiec et al., Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa

spruceup

:christmas_tree: spruceup

teaching

Tutorials written for my Spring 2015 class on the basics of computing for biologists

uce-to-protein

marekborowiec/AMAS

Calculate summary statistics and manipulate multiple sequence alignments

marekborowiec/spruceup

:christmas_tree: spruceup

marekborowiec/metazoan_phylogenomics

Code from Borowiec et al., Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa

marekborowiec/good_genes

marekborowiec/lab-wiki

marekborowiec/teaching

Tutorials written for my Spring 2015 class on the basics of computing for biologists

marekborowiec/uce-to-protein

marekborowiec/ant_classification

marekborowiec/aryn-and-marek

marekborowiec/DiscoVista

marekborowiec/dorylinae_phylogenomics

Scripts used in Dorylinae UCE phylogenomics study

marekborowiec/field_notes_kml

Converts AntWeb style field notes to KML

marekborowiec/kinda_date

marekborowiec/Master_Bibtex

my master bibtex bibliography file

marekborowiec/notebooks

Jupyter notebooks for code sharing

marekborowiec/partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.

marekborowiec/phylohacks.github.io

marekborowiec/phyluce

software for UCE (and general) phylogenomics

marekborowiec/posterior_thinner

marekborowiec/PosteriorPredictionPipeline

marekborowiec/remove_empty_columns

Script to remove missing data-only columns from multiple sequence alignments

marekborowiec/sepp

Ensemble of HMM methods (SEPP, TIPP, UPP)

marekborowiec/spruceup-ms

marekborowiec/test_script

output from workflow used in blog post about command `script`

marekborowiec/tree_thinner

Extracts the desired number of trees from a MrBayes posterior tree file

marekborowiec/UPhO

Scripts for homology and orthology assessment from genomic sequences.

marekborowiec/useful_1liners

Collection of useful one-liners in awk, sed, bash etc.