mariabo8

mariabo8's Stars

• bonsai-rx/pco

  Bonsai Library for interfacing and acquiring images from PCO cameras

  Language:C#1

• bonsai-rx/video

  A Bonsai Library containing reactive infrastructure to access various video sources using a DirectShow interface

  Language:C#32

• bonsai-rx/bonsai-rx.github.io

  A visual programming language for reactive systems

  Language:HTML66

• bonsai-rx/bonsai

  The compiler, IDE, and standard library for the Bonsai visual programming language for reactive systems

  Language:C#14329

• bruchaslab/nociceptin2019

  MatLab code used for 2019 publication: A Paranigral VTA Nociceptin Circuit that Constrains Motivation for Reward

  Language:MATLAB3

• bonsai-rx/deeplabcut

  A Bonsai interface for real-time markerless pose estimation using DeepLabCut

  Language:C#489

• baidatong/NeuroSeg

  the codes of NeuroSeg

  Language:Matlab92

• mukamel-lab/CellSort

  This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

  Language:Matlab2517

• zhoupc/CNMF_E

  Constrained Nonnegative Matrix Factorization for microEndoscopic data

  Language:MATLAB14073

• flatironinstitute/NoRMCorre

  Matlab routines for online non-rigid motion correction of calcium imaging data

  Language:MATLAB14489

• Psychtoolbox-3/Psychtoolbox-3

  Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU Octave functions for vision and neuroscience research.

  Language:C440226

• garrisonlab/worm_calcium_imaging

  Code for analyzing C. elegans data for the ribo-camp project

  Language:Jupyter Notebook1

• focolab/ribo-gcamp

  code for ribo-gcamp project

  Language:Jupyter Notebook1

• OrenForkosh/IdentityDomains

  Mathematical Framework for the Study of Personality

  Language:MATLAB103

• zhoupc/OASIS_matlab

  Language:MATLAB3327

• hms-dbmi/brainmapr

  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Brain Atlas

  Language:R177

• BVLC/caffe

  Caffe: a fast open framework for deep learning.

  Language:C++34.1k18.7k

• MouseLightProject/Analysis-Paper

  Analysis scripts for Winnubst et al. 2019

  Language:MATLAB62

• abria/TeraStitcher

  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

  Language:C++8232

• ChristophKirst/ClearMap

  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

  Language:Python5240

• djamesbarker/FiberPhotometry

  Language:MATLAB82

• ThomasAkam/photometry_preprocessing

  Fiber photometry data preprocessing - denoising, photobleaching and motion correction.

  Language:Jupyter Notebook203

• kutlugunes/FiberPhotometry

  Fiber Photometry Analysis Pipeline for the Calipari Lab

  Language:MATLAB11

• tyrsu836/Fiber_Photometry_Python

  Porting our Fiber-photometry analysis from MATLAB to Python, and eventually morphing it into a user-friendly GUI that is flexible enough to work for everyone in the lab's analysis.

  21

• felixsc1/fiberphotometry

  Python-based analysis tools for simultaneous calcium fiber photometry and fMRI measurements. Currently for internal use at the animal imaging center Zurich, Switzerland.

  Language:Jupyter Notebook31

• claylacefield/fiberPhotBehav

  Fiber photometry and behavior analysis (TDT systems, MedAssoc behavior)

  Language:Matlab3

• nworley01/fefiphopy

  This package provides functions for cleaning and analyzing fiber photometry data.

  Language:Python41

• AllenInstitute/stpt_registration

  STPT registration methods

  Language:C++71

• brainglobe/brainrender

  a python based software for visualization of neuroanatomical and morphological data.

  Language:Python54978

• AllenInstitute/cocoframer

  COmmon COordinate FRAMEwork in R

  Language:R369