mariabo8

mariabo8's Stars

• nytimes/covid-19-data

  A repository of data on coronavirus cases and deaths in the U.S.

  7k3186183.5k

• talmolab/sleap

  A deep learning framework for multi-animal pose tracking.

  Language:Python4372267497

• pynapple-org/pynapple

  PYthon Neural Analysis Package :pineapple:

  Language:Python2821018463

• YttriLab/B-SOID

  Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

  Language:Python192128357

• brainglobe/cellfinder

  Automated 3D cell detection in very large images

  Language:Python1811523739

• olivierfriard/BORIS

  Behavioral Observation Research Interactive Software

  Language:Python1771871235

• LINCellularNeuroscience/VAME

  Variational Animal Motion Embedding - A tool for time series embedding and clustering

  Language:Python1761312660

• FeeLab/seqNMF

  An algorithm for unsupervised discovery of sequential structure

  Language:MATLAB16013553

• losonczylab/sima

  Python package for analysis of dynamic fluorescence microscopy data

  Language:Python1002212750

• umyelab/LabGym

  Quantify user-defined behaviors.

  Language:Python702728

• petersaj/neuropixels_trajectory_explorer

  Neuropixels trajectory explorer with the Allen CCF mouse atlas

  Language:MATLAB6982225

• LernerLab/GuPPy

  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.

  Language:Python6569711

• PeyracheLab/pynacollada

  pynapple collaborative data analysis (high level python scripts) :tropical_drink:

  Language:Jupyter Notebook3721513

• katemartian/Photometry_data_processing

  Language:Jupyter Notebook253013

• PrincetonUniversity/BrainPipe

  Language:Jupyter Notebook18939

• ncguilbeault/BonZeb

  Language:C#12532

• neil-gallagher/CSFA

  Codebase for Cross-Spectral Factor Analysis (Gallagher et al., 2017)

  Language:MATLAB12826

• open-ephys/Bonsai.Miniscope

  Bonsai package for controlling headborne, calcium imaging miniscopes

  Language:C#126126

• DombeckLab/IMRSIV

  Language:C#10201

• pyPhotometry/code

  pyPhotometry code, GUI and micropython firmware

  Language:Python103510

• LaubachLab/MedParse

  Read MedPC data into python and matlab

  Language:Jupyter Notebook9202

• murthylab/leap

  LEAP Estimates Animal Pose

  Language:Matlab5901

• PrincetonUniversity/pytlas

  Language:Jupyter Notebook552

• elifesciences-publications/seqNMF

  An algorithm for unsupervised discovery of sequential structure

  Language:MATLAB4201

• LaubachLab/Data-Analysis

  Python and R code for analyzing MedPC data

  Language:Python4100

• mpastell/CowLog

  Software for recording behaviors from digital video

  Language:JavaScript4372

• ParsaNilchian/animal-variability

  Code for "Animal to Animal Variability in Partial Hippocampal Remapping" by Nilchian, Wilson, Sanders 2022

  Language:Jupyter Notebook3201

• rsenne/RamiPho

  Fiber Photometry Python Library for the Ramirez Lab

  Language:Jupyter Notebook3101

• lintianlab/psychLight

  Language:MATLAB210

• leomol/pupillometry

  Pupil Tracker

  Language:Python1