marinebon

Pinned Repositories

edna-vis
visualization app for environmental DNA (eDNA), using R shiny
Language:R6 4 05
eDNA_microbes_whales
eDNA params files
Language:Jupyter Notebook33
info-demo
Infographiq boilerplate & demo
Language:HTML31
infographiqJS
Infographiq, ie intelligent interactive infographics, core JavaScript library
Language:HTML8 11 51
infographiqR
R functions for creation of interactive intelligent infographics, ie infographiq
Language:R112
mbon-dashboard-server
server software for MBON early alert dashboard using Docker
Language:Python12
obisindicators
R package for generating indicators from OBIS
Language:Jupyter Notebook6 13 404
p2p
Pole to Pole website
Language:R31
rvc-fk
Florida Keys Reef Fish Biodiversity through time
Language:HTML10
seascapeR
helper functions for data summary and visualization of seascapes (Kavanaugh et al)
Language:HTML2 12 61

marinebon's Repositories

marinebon/infographiqJS
Infographiq, ie intelligent interactive infographics, core JavaScript library
Language:HTML8 11 51
marinebon/edna-vis
visualization app for environmental DNA (eDNA), using R shiny
Language:R6 4 05
marinebon/infographiq
Overview documentation (in bookdown) for creating intelligent interactive infographics, ie infographiq
Language:R30
marinebon/p2p
Pole to Pole website
Language:R31
marinebon/map-of-activities
MBON Map of Activities
Language:Python22
marinebon/MarineSDMs
Marine Species Distribution Modeling (SDM) Quarto book
Language:R2
marinebon/seascapeR
helper functions for data summary and visualization of seascapes (Kavanaugh et al)
Language:HTML2 12 61
marinebon/dwc-bias-analysis
An analysis of sampling spatial, tempora, and taxonomic biases for Darwin-Core (Dwc) data.
Language:Jupyter Notebook1 6 01
marinebon/extractr
Extraction functions using R for common datasets (ERDDAP, DataOne, etc)
Language:R1 10 7
marinebon/marinebon.github.io
old website for the Marine Biodiversity Observation Network, aka MBON
Language:HTML12
marinebon/mbon-dashboard-server
server software for MBON early alert dashboard using Docker
Language:Python12
marinebon/mbon_data_uploader
frontend for uploading mbon data into the mbon-in-a-box stack
Language:Python1
marinebon/py-dwc-viz
Python Package for data analysis and visualisation for Darwin Core data, with plug-and-play from providers like OBIS and GBIF.
Language:Python1 9 41
marinebon/www_marinebon2
MBON Website 2021 Rebuild in progress
Language:TeX11
marinebon/api
custom application programming interface (API) to query marine biodiversity
Language:R
marinebon/aquamaps-downscaled
initial attempt to downscale AquaMaps species distribution models to finer spatial resolution a la GEBCO bathymetry (15 arc second)
Language:HTML
marinebon/aquamapsduckdb
Reformatting of aquamapsdata R package with faster duck database and new terra package for rasters
Language:R1
marinebon/awesome-erddap-datasets
Curated list of datasets available via ERDDAP
marinebon/bio-idx-wg
MBON Biodiversity Indicators Workin Group -- various outputs, starting with kickoff survey
Language:JavaScript
marinebon/data-management-checklists
[DRAFT] data management protocol checklists containing recommendations from the MBON Data Management Working Group
10 3
marinebon/data_reports
Quarto reports generated to show status of MBON-mediated datasets.
Language:R
marinebon/dataset-registry
Registry of MBON-supported datasets
marinebon/marinebon_app
docker for marinebon.app
Language:Shell
marinebon/marinebon_org_old_site
Raw html for older (201?-2019) website built using godaddy website builder
Language:HTML
marinebon/open-biodiversity-assessment-pub
WiP Open Biodiversity Assessment Publication
Language:Lua13 21
marinebon/open-biodiversity-indicators
Biodiversity indicators generated using open science methodology and FAIR taxonomic occurrence data.
Language:HTML13 01
marinebon/sdm-explore
Explore species distribution modeling
Language:HTML
marinebon/SLURMquamapR
R scripts to generate aquamaps using SLURM supercomputing scheduler
Language:Shell2 2
marinebon/www_marinebon
Hugo / R blogdown based website for marinebon.org staged at www.marinebon.app
Language:Jupyter Notebook
marinebon/www_marinebon3
Testing latest blogdown with Hugo wowchemy/starter-academic
Language:SCSS1