Pinned Repositories
basespace-invaders
A collection of tools to work with Illumina's basespace
bcbb
Useful bioinformatics code, primarily in Python and R
bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
BestPracticesWorkshop
Repository for the workshop "Best practices on development"
bioluigi
Pipeline framework for biological analyses based on luigi
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
config
Various config files I don't want to re-type
cutadapt
cutadapt removes adapter sequences from sequencing reads
miRNA_processing
Scripts to process miRNA from trimming through annotation.
specfiles
rpm specfiles used for building packages in use at SciLifeLab
mariogiov's Repositories
mariogiov/miRNA_processing
Scripts to process miRNA from trimming through annotation.
mariogiov/specfiles
rpm specfiles used for building packages in use at SciLifeLab
mariogiov/cutadapt
cutadapt removes adapter sequences from sequencing reads
mariogiov/basespace-invaders
A collection of tools to work with Illumina's basespace
mariogiov/bcbb
Useful bioinformatics code, primarily in Python and R
mariogiov/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
mariogiov/BestPracticesWorkshop
Repository for the workshop "Best practices on development"
mariogiov/bioluigi
Pipeline framework for biological analyses based on luigi
mariogiov/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
mariogiov/config
Various config files I don't want to re-type
mariogiov/de_novo_scilife
mariogiov/deap
Distributed Evolutionary Algorithms in Python
mariogiov/dotfiles
mariogiov/FRC_align
Computes FRC from SAM/BAM file and not from afg files
mariogiov/genologics
Python interface to the GenoLogics LIMS server via its REST API.
mariogiov/ipython-cluster-helper
Tool to easily start up an IPython cluster on different schedulers.
mariogiov/lic
mariogiov/mario_scripts
mariogiov/modules.sf.net
Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)
mariogiov/ngi_pipeline
Code driving the production pipeline at SciLifeLab (not yet in production)
mariogiov/ngs.test.data
Test data set generation for ngs
mariogiov/PyConSweden2015
Material for PyCon Sweden 2015 proposal/presentation
mariogiov/radseq
Scripts and wrappers for radtags code to deal with SciLifeLab directory structures.
mariogiov/scilifelab
Misc code snippets for Science For Life Laboratory
mariogiov/spruce_genome_project
Set of tools to assist spurce2.0 project