Pinned Repositories
arduino
My repository to share code for Arduino devices.
bioimage_analysis_with_icy
Slides from the webinar Bioimage analysis with Icy given the 22nd of April 2020 for the NEUBIAS Academy @home
bookprep
The goal of {bookprep} is to prepare a {bookdown} project from a customizable bookdown skeleton and, if needed, a template for the chapters. {bookprep} helps creating reproducible yet flexible bookdown projects, for instance to deliver data analyses to customers following a standardized format.
cellviz3d
Tools for 3D/4D interactive visualization of cells and biological tissue
FibrilTool_Batch
FibrilTool Batch is an automated version of the Fiji plugin FibrilTool (Boudaoud et al., Nature Protocols 2014)
mamut2r
R package to read xml outputs from MaMut Fiji plugin and create treemap plots.
mgx2r
Import mesh and cell graph files from MorphoGraphX software
NEUBIAS_TS10_Rintro
This repository contains the datasets, the scripts, solutions and slides needed for the 3h course "Introduction to R for bioimage analysis" given by Marion Louveaux during the NEUBIAS Training School 10 for Early Career Investigators in Luxembourg in 2019.
NEUBIAS_TS15_DataViz
A brief introduction to data visualization
rr2021_bookprep
Presentation of {bookprep} at the Rencontres R (2021).
marionlouveaux's Repositories
marionlouveaux/bioimage_analysis_with_icy
Slides from the webinar Bioimage analysis with Icy given the 22nd of April 2020 for the NEUBIAS Academy @home
marionlouveaux/cellviz3d
Tools for 3D/4D interactive visualization of cells and biological tissue
marionlouveaux/NEUBIAS_TS10_Rintro
This repository contains the datasets, the scripts, solutions and slides needed for the 3h course "Introduction to R for bioimage analysis" given by Marion Louveaux during the NEUBIAS Training School 10 for Early Career Investigators in Luxembourg in 2019.
marionlouveaux/mgx2r
Import mesh and cell graph files from MorphoGraphX software
marionlouveaux/mamut2r
R package to read xml outputs from MaMut Fiji plugin and create treemap plots.
marionlouveaux/FibrilTool_Batch
FibrilTool Batch is an automated version of the Fiji plugin FibrilTool (Boudaoud et al., Nature Protocols 2014)
marionlouveaux/NEUBIAS_TS15_DataViz
A brief introduction to data visualization
marionlouveaux/rr2021_bookprep
Presentation of {bookprep} at the Rencontres R (2021).
marionlouveaux/arduino
My repository to share code for Arduino devices.
marionlouveaux/bookprep
The goal of {bookprep} is to prepare a {bookdown} project from a customizable bookdown skeleton and, if needed, a template for the chapters. {bookprep} helps creating reproducible yet flexible bookdown projects, for instance to deliver data analyses to customers following a standardized format.
marionlouveaux/clicy
GPU-accelerated Image Processing using CLIJ in Icy
marionlouveaux/cowsay
cowsay w/ more animals, in R
marionlouveaux/datadrivencv
R package for building customizable CVs from spreadsheets
marionlouveaux/discgolf
Discourse API R client
marionlouveaux/icy_introduction_for_Biomedaqu2020
Oral presentation for the Summer School Biomedaqu n°3
marionlouveaux/meetuprnantes_rmd_et_quarto
Présentation de Rmarkdown et Quarto au meetup R Nantes.
marionlouveaux/NEUBIAS2018_TS7
marionlouveaux/NEUBIAS_AnalystSchool2018
NEUBIAS Bioimage Analyst School Documentation
marionlouveaux/ods-systeme-de-design-gouv-fr
marionlouveaux/reprex
Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
marionlouveaux/rpkg-min
marionlouveaux/tweetrbot
Functions for a Twitter bot
marionlouveaux/useR2019-materials
Links to materials from tutorials and talks from useR 2019
marionlouveaux/W_ML-i2k-IcyNucleiSeg
Neubias-WG5 workflow for SpotDetection using Icy
marionlouveaux/W_ML-i2k-IJNucleiSeg
BIAFLOWS workflow to segment clustered nuclei using a laplacian filter, thresholding and a binary watershed transform.