/create-pptc-pdx-pie

Pie chart for Figure 1 of Manuscript

Primary LanguageRBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

PPTC PDX Pie Generation

Authors: Jo Lynne Rokita
Contact: Jo Lynne Rokita (rokita@email.chop.edu)
Organization: CHOP
Status: In-process
Date: 2024-08-17

Introduction

Here, we provide scripts to enable reproducible generation of Manuscript Figure 1: pie chart by PDX histology and assay.

Details

  • install-packages.R
  • create-pie.R
  • pie-colors.txt
  • pptc-pdx-clinical-web.txt

Software Requirements

R 3.4.3

Pipeline

# How to run:
# Download github repository in your home directory (~/)
git clone https://github.com/marislab/create-pptc-pdx-pie.git

# Run script to create pie chart
Rscript ~/create-pptc-pdx-pie/R/create-pie.R