marithetland

Pinned Repositories

Asmbl
Assembly and quality assessment of Illumina short-reads
Language:Nextflow0 1 02
KGWP1_crossniche
Code/commands used for KGWP1 cross-niche paper
Language:Shell00
msctrees
Scripts that are part of our MSc-students' work
0 1 00
ont-basecalling
Script for ONT-basecalling
Language:Python0 2 00
ONTmompS
Get L. pneumophila ST from long-read or hybrid assemblies.
Language:Python4 2 20
SeqDepth
Calculate sequencing depth of Illumina short-reads
Language:Python1 1 11
susCovONT
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Language:Python1 2 12

marithetland's Repositories

marithetland/ONTmompS
Get L. pneumophila ST from long-read or hybrid assemblies.
Language:Python4 2 20
marithetland/SeqDepth
Calculate sequencing depth of Illumina short-reads
Language:Python1 1 11
marithetland/susCovONT
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Language:Python1 2 12
marithetland/Asmbl
Assembly and quality assessment of Illumina short-reads
Language:Nextflow0 1 02
marithetland/KGWP1_crossniche
Code/commands used for KGWP1 cross-niche paper
Language:Shell00
marithetland/msctrees
Scripts that are part of our MSc-students' work
0 1 00
marithetland/ont-basecalling
Script for ONT-basecalling
Language:Python0 2 00