mark-welsh

@chopdgd @d3b-centerPhiladelphia

Pinned Repositories

bfx-tools-wdl
WDL tasks for commonly used BFX tools
Language:WDL5 2 625
somatic_variant_classification
Machine learning classifier to distinguish sequencing artifacts from true SNVs in pediatric cancers
Language:Python3 3 00
cancerdx-wgs
Scripts needed for the cancerdx WGS Cavatica pipeline
Language:Python0 2 10
django-rest-framework
Web APIs for Django. 🎸
Language:Python0 1 00
dockerfiles
A repo for dockerfiles being used in pipelines
Language:Dockerfile0 2 00
gatk4-somatic-cnvs
Workflows for somatic copy number variant discovery with GATK4
Language:WDL0 1 00
OMPARE
OMics PAtient REport
Language:R0 1 00
plotly
An interactive graphing library for R -- forked for manual updates to latest versions of plotly.js
Language:R0 1 00
RshinyApps
My Apps for Rshiny
Language:R0 2 00
superFreq
Analysis pipeline for cancer exomes
Language:R0 1 00

mark-welsh's Repositories

mark-welsh/cancerdx-wgs
Scripts needed for the cancerdx WGS Cavatica pipeline
Language:Python0 2 10
mark-welsh/django-rest-framework
Web APIs for Django. 🎸
Language:Python0 1 00
mark-welsh/dockerfiles
A repo for dockerfiles being used in pipelines
Language:Dockerfile0 2 00
mark-welsh/gatk4-somatic-cnvs
Workflows for somatic copy number variant discovery with GATK4
Language:WDL0 1 00
mark-welsh/OMPARE
OMics PAtient REport
Language:R0 1 00
mark-welsh/plotly
An interactive graphing library for R -- forked for manual updates to latest versions of plotly.js
Language:R0 1 00
mark-welsh/RshinyApps
My Apps for Rshiny
Language:R0 2 00
mark-welsh/superFreq
Analysis pipeline for cancer exomes
Language:R0 1 00