markmipt

markmipt's Stars

• markmipt/ms1searchpy

  Language:Python85

• compomics/ThermoRawFileParser

  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

  Language:C#18350

• dashabezik/Morley

  Morphometry of germinated plants on python

  Language:Python2

• gorodnitskiy/yet-another-lightning-hydra-template

  Flexible and scalable template based on PyTorch Lightning + Hydra. Efficient workflow and reproducibility for rapid ML experiments.

  Language:Python2059

• dev-ev/julia-vs-python-ms-scripting

  Performance of Julia and Python for reading and matching mass spectrometry data

  Language:Jupyter Notebook2

• PostoenkoVI/IQMMA

  Project improves quantitative analysis by applying multiple feature detection tools and pick the best from their results.

  Language:Python32

• abdrakhimov1/Biosaur

  Language:Python146

• gorodnitskiy/pytorch-infer-utils

  This package proposes simplified exporting pytorch models to ONNX and TensorRT, and also gives some base interface for ML models inference.

  Language:Python391

• waterlooms/mstracer

  Language:Java4

• NicoleEic/Brain_and_Code

  Language:Python155

• jessegmeyerlab/PeCorA

  Peptide Correlation analysis

  Language:R92

• microsoft/LightGBM

  A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

  Language:C++16.6k3.8k

• northomics/pepFunk

  Peptide-centric functional enrichment tool

  Language:R42

• markmipt/pyteomics.pepxmltk

  Language:Python2

• markmipt/scavager

  Language:Python51

• compomics/DeepLC

  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

  Language:Python5519

• bigbio/proteomics-sample-metadata

  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

  78108

• SimpleNumber/aa_stat

  AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.

  Language:Python65

• statisticalbiotechnology/representative-spectra-benchmark

  Analysis of different consensus spectrum construction methods

  Language:Jupyter Notebook511

• Nesvilab/philosopher

  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

  Language:Go10918

• statisticalbiotechnology/diffacto

  Language:Python138

• statisticalbiotechnology/GPTime

  Chromatographic Retention Time prediction with Gaussian Procsses

  Language:Python92

• fickludd/dinosaur

  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.

  Language:Scala4219

• userbz/DeMix

  DeMix workflow for peptide identification

  Language:Python65