Pinned Repositories
arduino-wind-logger
Simple low-cost loggers for wind sensors
embed_krona
Krona charts in R(Studio)
exprtk_rs
Rust bindings to ExprTk (http://www.partow.net/programming/exprtk/)
newspublisher
Revolution version of NewsPublisher snippet
seq_consensus
Alignment consensus in Python
seq_io
FASTA and FASTQ parsing in Rust
seqtool
Fast and flexible tool for reading, modifying and writing biological sequences
snakecharmer
Amplicon data processing workflows for diversity analysis
thread_io
Rust crate for performing I/O in background thread
markschl's Repositories
markschl/seq_io
FASTA and FASTQ parsing in Rust
markschl/thread_io
Rust crate for performing I/O in background thread
markschl/seqtool
Fast and flexible tool for reading, modifying and writing biological sequences
markschl/exprtk_rs
Rust bindings to ExprTk (http://www.partow.net/programming/exprtk/)
markschl/snakecharmer
Amplicon data processing workflows for diversity analysis
markschl/newspublisher
Revolution version of NewsPublisher snippet
markschl/arduino-wind-logger
Simple low-cost loggers for wind sensors
markschl/bio_scripts
Collection of simple scripts used for metabarcoding and other analyses
markschl/embed_krona
Krona charts in R(Studio)
markschl/seq_consensus
Alignment consensus in Python
markschl/buffer-redux
A drop-in replacement for Rust's std::io::BufReader, with extra features
markschl/ngs-sample-tab
Helper script to create sample files for Next-Generation Sequencing (NGS) analysis pipelines
markschl/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
markschl/rust-bio-types
A library of common biomedical types.
markschl/uvsnake
USEARCH/VSEARCH-based pipeline for amplicon data processing