This repo accompanies our article:
Zhang, T., Rosenberg, M., Jing, Z., Perona, P., and Meister, M. (2023). Endotaxis: A neuromorphic algorithm for mapping, goal-learning, navigation, and patrolling. BioRxiv.
Contents:
Endotaxis_230903.pdf: a copy of the article.
Endotaxis-F.ipynb: Jupyter notebook with code to reproduce the analysis in the article.
sims,figs: Output directories for simulations and figures produced by the code.
data: Experimental data needed to run the code.
Plot_Utils.py,Maze_Utils.py: Python modules with useful functions.
To replicate all the calculations:
• Empty the figs/ and sims/ directories
• Run the entire notebook Endotaxis-F.ipynb
• Now figs/ should contain all the figures in the article