Pinned Repositories
5pillars
Five pillars of computational reproducibility
ART_methylation
Meta-analysis of DNA methylation in ART
background
Investigation of two subtle bugs in some enrichment softwares
de_compare
dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
docker_for_r_tutorial
How to add a Docker image to your R project to improve reproducibility
GeneNameErrors2020
getDEE2
Programmatic access to the DEE2 RNA expression dataset.
gmea
Gene Methylation Enrichment Analysis
mitch
An R package for multi-dimensional pathway enrichment analysis
markziemann's Repositories
markziemann/dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
markziemann/mitch
An R package for multi-dimensional pathway enrichment analysis
markziemann/5pillars
Five pillars of computational reproducibility
markziemann/background
Investigation of two subtle bugs in some enrichment softwares
markziemann/docker_for_r_tutorial
How to add a Docker image to your R project to improve reproducibility
markziemann/gmea
Gene Methylation Enrichment Analysis
markziemann/contam
Quantify contamination in fastq sequence data
markziemann/enrichment_recipe
A recipe for extremely reproducible enrichment analysis
markziemann/lung_brain
markziemann/shoulder-instability-osteroarthritis
RNA-seq study of shoulder tissue
markziemann/asd_meth
analysis of asd methylation data
markziemann/markziemann
markziemann/bioinformatics_intro_workshop
A four part introduction to bioinformatics using the Linux command line, R and established best practices.
markziemann/emily_cas13_rnaseq
markziemann/exercise_histone
markziemann/fgsea
Fast Gene Set Enrichment Analysis
markziemann/gabi_10x_multiome
Using 10X Genomics Multi-omics system to understand latent viruses in single cells.
markziemann/gmea_app
Shiny app for LAM enrichment analysis of Infinium methylation data
markziemann/hearps_nkmono
single cell pipeline
markziemann/maryam_rnaseq
markziemann/miR-enrichment
markziemann/noise
Are genes more noisy than pathways
markziemann/paddi-genomics
Genomics analysis for the PADDI project
markziemann/parallel_pathway
markziemann/paula_proteomics
markziemann/phyllodes_pathways
pathway analysis of non-malignant vs malignant phyllodes samples
markziemann/sc_macrophage
scRNA-seq analysis of macrophages
markziemann/schizophrenia
A pathway analysis of blood based methylation changes in schizophrenia
markziemann/SurveyEnrichment2
A systematic investigation of enrichment analysis rigour
markziemann/ziemannlab
Ziemann lab website