Pinned Repositories
cartographer
gromit
Auxiliary tools for automated atomistic and coarse-grained molecular dynamics simulations using gromacs
martini-forcefields
Collection of interaction and molecule parameters for the Martini3 force-field
martini-workshop
Martini Workshop: Simulating a Minimal Bacterial Cell
Martini_Minimal_Cell
MDVoxelSegmentation
A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.
polyply_1.0
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
TS2CG
TS2CG: Conversion of triangulated surfaces to (coarse grain) membrane models for molecular simulation
TS2CG1.1
TS2CG version 1.1
vermouth-martinize
Describe and apply transformation on molecular structures and topologies
marrink-lab's Repositories
marrink-lab/polyply_1.0
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
marrink-lab/vermouth-martinize
Describe and apply transformation on molecular structures and topologies
marrink-lab/TS2CG
TS2CG: Conversion of triangulated surfaces to (coarse grain) membrane models for molecular simulation
marrink-lab/MDVoxelSegmentation
A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.
marrink-lab/martini-forcefields
Collection of interaction and molecule parameters for the Martini3 force-field
marrink-lab/martini-workshop
Martini Workshop: Simulating a Minimal Bacterial Cell
marrink-lab/cartographer
marrink-lab/gromit
Auxiliary tools for automated atomistic and coarse-grained molecular dynamics simulations using gromacs
marrink-lab/Martini_Minimal_Cell
marrink-lab/shocker
Setting up and running simulations imitating the process of osmotic shocking
marrink-lab/Martini3-small-molecules
Martini 3 small-molecule database
marrink-lab/TS2CG1.1
TS2CG version 1.1
marrink-lab/bentopy
Packs stuff in boxes
marrink-lab/martinize-examples
Examples for Martinize2 and vermouth
marrink-lab/PEGylated_proteins_tutorial
Files required for our tutorial on PEGylated proteins
marrink-lab/martini_sour
Setup and run titratable Martini simulations
marrink-lab/martini_sour_examples
Examples corresponding to marrink-lab/martini_sour
marrink-lab/polyply_regression_tests
Regression tests and tutorial input files for the polyply software suite
marrink-lab/pycgbuilder
A Qt5 based GUI for making mapping files
marrink-lab/VisualizationServer
Managing all issues and suggestions regarding the Visualization Server. This tracking is meant for issues raised by users both inside the Molecular Dynamics group, and users within the University of Groningen.
marrink-lab/cgbuilder
Build coarse-grained mapping for molecules from a web-GUI