Movement anlysis scripts to reproduce movement analysis fugures for the paper
Fate restricted stromal fibroblasts and adipocytes demonstrate multi-modal responses to tissue injury
by Shruthi Kalgudde Gopal, Ania Maria Stefanska, Dongsheng Jiang, Meshal Ansari, Pushkar Ramesh, Johannes W. Bagnoli, Donovan Correa-Gallegos, Simon Christ, Ilias Angelidis, Valerio Lupperger, Carsten Marr, Lindsay C. Davies, Wolfgang Enard, Herbert B. Schiller, and Yuval Rinkevich
Prerequisites:
- download the required data from https://hmgubox2.helmholtz-muenchen.de/index.php/s/PS5AtZTJTn7QKtS
- required software:
- MATLAB (R2019a) with Statistics and Machine Learning Toolbox
To reproduce results:
- Add the movementAnalysis folder to Matlab path
- Open the run.m file
- Define your inputFolder
- Run run.m to reproduce all movement analysis figures
All figures will be saved in ./out/