Pinned Repositories
breakclone-1
CNsignatures
This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).
CNVRanger
Functionality for CNV analysis
ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
Excavator2
A fork of the project Excavator2 from sourceforge.
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
miRPIPE
Simple scripts to parallelize miRNA analysis with sRNAtoolbox performed for my Master thesis.
neoadjuvant-therapy-response-predictor
precision-clonality-code
breakclone R package and scripts used in the analysis for the PRECISION clonality paper.
precision_clonality
marromesc's Repositories
marromesc/miRPIPE
Simple scripts to parallelize miRNA analysis with sRNAtoolbox performed for my Master thesis.
marromesc/breakclone-1
marromesc/CNsignatures
This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).
marromesc/CNVRanger
Functionality for CNV analysis
marromesc/ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
marromesc/Excavator2
A fork of the project Excavator2 from sourceforge.
marromesc/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
marromesc/neoadjuvant-therapy-response-predictor
marromesc/precision-clonality-code
breakclone R package and scripts used in the analysis for the PRECISION clonality paper.
marromesc/precision_clonality
marromesc/presentations
Presentations from the Clinical Development Unit Data Science Team
marromesc/protein_analyzer
A very simple script to analyze a protein with EMBOSS.
marromesc/QDNAseq.hg38
QDNAseq bin annotation for hg38