Template for parameterized reports with Rmarkdown
Docker image is available at https://hub.docker.com/r/mreixachs/rmarkdown-docker
docker pull mreixachs/rmarkdown-docker
For a specific version use mreixachs/rmarkdown-docker:0.0.1
docker run -v ${PWD}:/wd mreixachs/rmarkdown-docker /wd/sample_data.tsv /wd/sample_data_report.html
-
-v ${PWD}:/wd: This command establishes a connection between the present working directory and a designated location called /wd within the Docker container. This arrangement enables interaction and modification of files between the container and the host directory. -
/wd/sample_data.tsv: The first argument specifies the input file location, which should be under the same directory as output file. -
/wd/sample_data_report.html: The second argument [OPTIONAL] specifies the output file where the report will be generated. Defaults to input file basename with the extension_report.html.
The parameterized report takes sample_data.tsv which contains USArrest data from R datasets, and outputs a formatted table as in sample_data_report.html.
To adapt the report to different input files, change the contents of parameterized_report.Rmd and adapt install_packages.R, if needed.
A custom .css is provided which can be found at style.css.
To change the main theme color modify the --theme-color variable definition in:
:root {
--theme-color: #ee6c4d;
}
Footer contents from footer.html can also be adjusted.