marsdenl

Pinned Repositories

• cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.4k416

• Giotto

  Spatial omics analysis toolbox

  Language:R277102

• Baysor

  Bayesian Segmentation of Spatial Transcriptomics Data

  Language:Julia15932

• sopa

  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

  Language:Python15122

• proseg

  Probabilistic cell segmentation for in situ spatial transcriptomics

  Language:Rust493

• vizgen-postprocessing

  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.

  Language:Python255

marsdenl's Repositories